Wall clock time and date at job start Mon Mar 30 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 N 1.46496 * 109.47421 * 180.02562 * 10 7 6 12 12 C 1.34777 * 120.00258 * 180.02562 * 11 10 7 13 13 O 1.21682 * 119.99992 * 359.97438 * 12 11 10 14 14 C 1.46376 * 119.99803 * 180.02562 * 12 11 10 15 15 H 1.07999 * 120.00155 * 359.97438 * 14 12 11 16 16 C 1.40050 * 119.99867 * 179.97438 * 14 12 11 17 17 N 1.30676 * 119.99970 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00165 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46819 * 60.00279 * 18 16 14 20 20 H 1.48494 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47196 * 300.00784 * 18 16 14 22 22 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 23 23 C 1.38147 * 120.05382 * 359.45639 * 22 6 5 24 24 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 25 25 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 26 26 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 27 27 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 29 29 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 30 30 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 32 32 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 33 33 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 35 35 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 36 36 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 37 37 H 0.97008 * 119.99406 * 359.97438 * 11 10 7 38 38 H 0.96996 * 119.99788 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.97178 * 179.70593 * 22 6 5 40 40 H 1.08001 * 120.02610 * 180.24214 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 7 3.5976 7.4331 0.0031 12 6 2.8635 8.5634 0.0036 13 8 1.6484 8.4998 0.0031 14 6 3.5282 9.8676 0.0035 15 1 4.6067 9.9241 0.0035 16 6 2.7654 11.0422 0.0034 17 7 1.4604 10.9738 0.0039 18 14 3.6135 12.7066 0.0041 19 1 4.4624 12.8300 -1.2081 20 1 2.5908 13.7832 0.0045 21 1 4.4616 12.8295 1.2168 22 6 1.9212 3.6047 0.0068 23 6 1.2916 2.3751 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 4.0209 0.3798 0.0014 28 1 5.1346 2.5749 0.0019 29 1 5.6106 4.3542 1.2522 30 1 5.3545 6.1159 1.2534 31 1 4.2369 5.0535 2.1421 32 1 4.2384 5.0564 -2.1363 33 1 5.3554 6.1176 -1.2454 34 1 5.6115 4.3559 -1.2463 35 1 2.3104 6.0378 -0.8879 36 1 2.3090 6.0368 0.8921 37 1 4.5663 7.4838 0.0039 38 1 0.9322 11.7874 0.0035 39 1 1.3343 4.5114 0.0120 40 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:40 Heat of formation + Delta-G solvation = -85.999721 kcal Electronic energy + Delta-G solvation = -21205.213253 eV Core-core repulsion = 17983.865684 eV Total energy + Delta-G solvation = -3221.347569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36274 -40.00180 -38.83104 -36.77650 -34.67730 -33.55683 -32.18446 -30.14066 -28.94320 -28.19066 -28.10764 -26.65300 -23.65916 -23.18576 -21.70364 -20.22463 -19.29101 -19.05726 -17.52352 -17.18802 -16.64237 -16.42621 -16.04753 -15.83119 -15.78537 -15.39340 -14.76065 -14.51048 -14.45218 -14.13749 -14.05973 -13.61312 -13.55144 -13.09926 -13.08065 -12.84832 -12.78192 -12.59485 -12.57614 -12.13754 -12.10748 -12.00814 -11.69104 -11.67700 -11.33083 -10.91048 -9.95156 -9.87091 -9.44759 -9.03667 -8.28081 -6.84498 0.39133 0.44690 1.40622 1.44405 1.55963 2.25588 2.38408 2.48611 2.78427 3.12806 3.63196 3.66150 3.81903 3.91168 4.03298 4.06946 4.27004 4.31926 4.36413 4.44858 4.56804 4.69713 4.74355 4.75730 4.77585 4.89000 4.98053 5.02013 5.06076 5.13223 5.22719 5.32478 5.37079 5.44148 5.47756 5.71966 5.81012 5.89001 6.25799 6.29022 6.43867 6.87606 7.57772 8.50989 8.68860 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033527 B = 0.003512 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.937131 B = 7971.593005 C = 8610.166481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.153 4.153 5 C -0.068 4.068 6 C -0.106 4.106 7 C -0.022 4.022 8 C -0.133 4.133 9 C -0.133 4.133 10 C 0.149 3.851 11 N -0.748 5.748 12 C 0.537 3.463 13 O -0.636 6.636 14 C -0.574 4.574 15 H 0.089 0.911 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 0.999 3.001 19 H -0.253 1.253 20 H -0.276 1.276 21 H -0.254 1.254 22 C -0.101 4.101 23 C -0.210 4.210 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.110 0.890 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.644 -18.933 0.001 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.064 3.936 4 C -0.171 4.171 5 C -0.086 4.086 6 C -0.107 4.107 7 C -0.022 4.022 8 C -0.190 4.190 9 C -0.190 4.190 10 C 0.025 3.975 11 N -0.404 5.404 12 C 0.341 3.659 13 O -0.523 6.523 14 C -0.610 4.610 15 H 0.107 0.893 16 C -0.188 4.188 17 N -0.453 5.453 18 Si 0.818 3.182 19 H -0.177 1.177 20 H -0.201 1.201 21 H -0.177 1.177 22 C -0.119 4.119 23 C -0.229 4.229 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.669 -19.125 0.002 19.947 hybrid contribution -0.420 1.088 0.001 1.166 sum 5.249 -18.036 0.003 18.785 Atomic orbital electron populations 1.23300 0.76875 1.05515 1.01862 1.86022 1.23066 1.26614 1.88845 1.19219 0.93024 0.84135 0.97225 1.20678 0.91179 0.99313 1.05967 1.20987 1.00973 0.89804 0.96814 1.19686 0.93076 0.94772 1.03163 1.19571 0.94644 0.89928 0.98073 1.21856 0.99141 1.02851 0.95140 1.21857 0.99133 1.02847 0.95148 1.20998 0.94662 0.83644 0.98243 1.45807 1.09274 1.04387 1.80907 1.18628 0.86308 0.84960 0.76029 1.90544 1.16455 1.88019 1.57331 1.21413 0.94879 0.89944 1.54788 0.89309 1.27003 0.95091 1.05466 0.91200 1.70197 1.07790 1.30742 1.36589 0.85058 0.78265 0.74537 0.80339 1.17737 1.20058 1.17750 1.21094 0.95097 0.97354 0.98368 1.21338 1.00747 0.92006 1.08761 0.92315 0.92307 0.85890 0.83246 0.82524 0.89443 0.92197 0.93741 0.93743 0.92196 0.89445 0.95555 0.95542 0.76976 0.91646 0.87230 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.23 10.50 -92.37 -0.97 -8.20 16 3 C 0.11 2.64 6.69 22.51 0.15 2.79 16 4 C -0.15 -3.28 9.99 22.37 0.22 -3.06 16 5 C -0.07 -1.45 8.70 22.25 0.19 -1.26 16 6 C -0.11 -2.87 4.76 -19.85 -0.09 -2.96 16 7 C -0.02 -0.62 0.61 -52.93 -0.03 -0.65 16 8 C -0.13 -3.30 8.11 71.98 0.58 -2.72 16 9 C -0.13 -3.30 8.11 71.98 0.58 -2.72 16 10 C 0.15 6.04 3.22 86.38 0.28 6.32 16 11 N -0.75 -34.11 4.95 -467.41 -2.32 -36.42 16 12 C 0.54 31.77 7.75 86.36 0.67 32.44 16 13 O -0.64 -43.77 15.02 -4.29 -0.06 -43.83 16 14 C -0.57 -32.84 9.54 24.83 0.24 -32.60 16 15 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 16 C 0.03 1.54 5.50 85.30 0.47 2.01 16 17 N -0.82 -51.28 11.83 21.84 0.26 -51.02 16 18 Si 1.00 41.19 29.56 68.60 2.03 43.22 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 20 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.10 -3.03 8.97 22.25 0.20 -2.83 16 23 C -0.21 -5.47 9.04 22.37 0.20 -5.27 16 24 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 26 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 28 H 0.16 2.37 7.09 -2.91 -0.02 2.35 16 29 H 0.09 1.59 7.38 -2.39 -0.02 1.57 16 30 H 0.06 1.53 6.86 -2.39 -0.02 1.52 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.53 6.86 -2.39 -0.02 1.52 16 34 H 0.09 1.59 7.38 -2.39 -0.02 1.57 16 35 H 0.03 1.17 7.52 -2.38 -0.02 1.16 16 36 H 0.03 1.18 7.50 -2.39 -0.02 1.16 16 37 H 0.39 15.34 6.14 -92.70 -0.57 14.77 16 38 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 39 H 0.11 3.76 5.89 -2.91 -0.02 3.74 16 40 H 0.14 3.08 6.30 -2.91 -0.02 3.06 16 Total: -1.00 -78.86 326.86 4.19 -74.66 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.48 Total: 30.72 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.78 Total: -9.13 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.06 Total: -87.44 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -1.03 Total: -52.03 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -78.86 4.19 -74.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.338 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds