Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47221 * 2 1 4 4 C 1.52996 * 109.47232 * 239.99632 * 2 1 3 5 5 O 1.42902 * 109.46877 * 119.99252 * 2 1 3 6 6 C 1.35900 * 116.99847 * 62.90877 * 5 2 1 7 7 C 1.38733 * 120.05883 * 175.72326 * 6 5 2 8 8 C 1.38145 * 119.94461 * 180.02562 * 7 6 5 9 9 C 1.38268 * 120.05447 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.93810 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47217 * 90.00485 * 10 9 8 12 12 C 1.34770 * 120.00171 * 180.02562 * 11 10 9 13 13 O 1.21693 * 119.99775 * 359.97438 * 12 11 10 14 14 C 1.46375 * 120.00362 * 179.97438 * 12 11 10 15 15 H 1.07999 * 119.99510 * 359.97438 * 14 12 11 16 16 C 1.40047 * 120.00001 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00225 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99669 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47089 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47157 * 120.00005 * 18 16 14 21 21 H 1.48506 * 109.46685 * 239.99960 * 18 16 14 22 22 C 1.38254 * 120.11418 * 0.25368 * 9 8 7 23 23 C 1.38149 * 120.05522 * 359.44637 * 22 9 8 24 24 H 1.09002 * 109.47133 * 317.84707 * 1 2 3 25 25 H 1.08999 * 109.46929 * 77.84305 * 1 2 3 26 26 H 1.08997 * 109.47781 * 197.84643 * 1 2 3 27 27 H 1.09001 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46634 * 299.99474 * 3 2 1 29 29 H 1.08996 * 109.47111 * 59.99898 * 3 2 1 30 30 H 1.09002 * 109.47220 * 288.10541 * 4 2 1 31 31 H 1.08997 * 109.47012 * 48.10764 * 4 2 1 32 32 H 1.09005 * 109.47044 * 168.10961 * 4 2 1 33 33 H 1.07997 * 120.02792 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.97139 * 180.02562 * 8 7 6 35 35 H 1.09005 * 109.46410 * 209.99508 * 10 9 8 36 36 H 1.08996 * 109.47633 * 329.99601 * 10 9 8 37 37 H 0.96996 * 119.99888 * 359.97438 * 11 10 9 38 38 H 0.97004 * 120.00074 * 180.02562 * 17 16 14 39 39 H 1.08006 * 119.97706 * 179.70307 * 22 9 8 40 40 H 1.08005 * 120.02803 * 180.24957 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0062 -0.6735 1.1669 6 6 1.6919 -1.9898 1.2910 7 6 2.1954 -2.7274 2.3527 8 6 1.8748 -4.0654 2.4762 9 6 1.0533 -4.6698 1.5425 10 6 0.7058 -6.1298 1.6795 11 7 -0.5130 -6.2686 2.4805 12 6 -1.0155 -7.4926 2.7363 13 8 -0.4572 -8.4826 2.3015 14 6 -2.2329 -7.6314 3.5371 15 1 -2.7282 -6.7528 3.9233 16 6 -2.7554 -8.9034 3.8024 17 7 -2.1564 -9.9663 3.3347 18 14 -4.3094 -9.0803 4.8238 19 1 -4.7902 -7.7355 5.2306 20 1 -5.3567 -9.7581 4.0183 21 1 -4.0163 -9.8881 6.0350 22 6 0.5550 -3.9384 0.4803 23 6 0.8676 -2.5985 0.3557 24 1 -0.3633 0.7619 0.6897 25 1 -0.3633 0.2164 -1.0046 26 1 -0.3634 -0.9781 0.3149 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.8600 -1.7917 -1.1496 31 1 1.5141 -0.3445 -2.1264 32 1 3.1092 -0.5416 -1.3614 33 1 2.8374 -2.2559 3.0820 34 1 2.2662 -4.6399 3.3028 35 1 0.5414 -6.5583 0.6908 36 1 1.5253 -6.6539 2.1710 37 1 -0.9578 -5.4795 2.8274 38 1 -2.5185 -10.8473 3.5181 39 1 -0.0826 -4.4139 -0.2504 40 1 0.4748 -2.0266 -0.4720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -44.270908 kcal Electronic energy + Delta-G solvation = -20953.245591 eV Core-core repulsion = 17733.707519 eV Total energy + Delta-G solvation = -3219.538072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87809 -38.31190 -36.92294 -34.44049 -33.28471 -32.27510 -31.01247 -30.04081 -27.72724 -27.71302 -26.55903 -24.62829 -22.73474 -21.57701 -20.33674 -19.61310 -17.49067 -17.30318 -16.39409 -15.52213 -15.47847 -15.22296 -14.70538 -14.33823 -14.17790 -13.92551 -13.76460 -13.54670 -13.21859 -12.84405 -12.67812 -12.30208 -12.24290 -12.18401 -12.12057 -11.81941 -11.35378 -11.28667 -11.10615 -10.91095 -10.78051 -10.67814 -10.45748 -10.38303 -10.16877 -8.84176 -8.82903 -8.08505 -7.51526 -7.46167 -6.15884 -4.61246 1.43329 1.50978 3.07017 3.14674 3.22798 3.27533 3.81162 4.14854 4.41310 4.47315 4.61542 4.61798 4.88181 4.93428 5.08733 5.19126 5.21057 5.24391 5.29121 5.36814 5.44562 5.49021 5.53862 5.55414 5.71412 5.80554 5.85219 5.91387 5.93354 6.05894 6.31706 6.36871 6.45472 6.48683 6.88801 6.93728 7.45730 7.46135 7.97086 8.12854 8.36761 9.05207 9.57640 10.62669 10.81385 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.003167 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.862263 B = 8839.390616 C = 9130.189319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.109 3.891 3 C -0.137 4.137 4 C -0.203 4.203 5 O -0.310 6.310 6 C 0.127 3.873 7 C -0.156 4.156 8 C -0.066 4.066 9 C -0.123 4.123 10 C 0.173 3.827 11 N -0.763 5.763 12 C 0.554 3.446 13 O -0.582 6.582 14 C -0.544 4.544 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.069 4.069 23 C -0.224 4.224 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.381 0.619 38 H 0.267 0.733 39 H 0.125 0.875 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 20.896 -6.798 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.071 3.929 3 C -0.194 4.194 4 C -0.260 4.260 5 O -0.224 6.224 6 C 0.082 3.918 7 C -0.175 4.175 8 C -0.084 4.084 9 C -0.123 4.123 10 C 0.049 3.951 11 N -0.419 5.419 12 C 0.358 3.642 13 O -0.465 6.465 14 C -0.581 4.581 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.088 4.088 23 C -0.242 4.242 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.212 0.788 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.041 20.071 -7.028 22.401 hybrid contribution -1.090 0.308 0.464 1.224 sum 5.951 20.379 -6.563 22.222 Atomic orbital electron populations 1.22893 0.94874 1.04793 1.03149 1.21741 0.93914 0.92920 0.84291 1.21799 1.02069 0.92651 1.02864 1.22940 1.02399 1.03460 0.97178 1.86121 1.73175 1.20165 1.42986 1.18880 0.94798 0.83029 0.95073 1.20390 1.04445 0.93876 0.98782 1.20948 0.96095 0.93396 0.97993 1.20129 0.99358 0.97012 0.95841 1.19747 0.89739 0.89181 0.96458 1.46208 1.27736 1.09527 1.58385 1.18253 0.85042 0.80429 0.80471 1.90599 1.62886 1.36942 1.56038 1.20920 1.09587 0.93115 1.34508 0.91407 1.25711 0.97469 0.95450 0.94613 1.70032 1.35954 0.98394 1.35385 0.86325 0.81715 0.79005 0.79756 1.18782 1.20190 1.20176 1.20970 0.97543 0.92999 0.97301 1.21791 1.03788 0.96628 1.02023 0.91572 0.91078 0.89559 0.91603 0.90553 0.91542 0.89368 0.91073 0.91652 0.85544 0.85240 0.92701 0.92633 0.78786 0.92194 0.85680 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 8.11 37.16 0.30 -1.41 16 2 C 0.11 1.00 1.11 -90.62 -0.10 0.90 16 3 C -0.14 -0.97 8.74 37.16 0.32 -0.65 16 4 C -0.20 -1.69 8.08 37.16 0.30 -1.39 16 5 O -0.31 -3.77 9.79 -19.43 -0.19 -3.96 16 6 C 0.13 1.66 6.06 -39.21 -0.24 1.42 16 7 C -0.16 -2.08 9.99 -39.43 -0.39 -2.48 16 8 C -0.07 -0.95 9.69 -39.60 -0.38 -1.33 16 9 C -0.12 -1.94 5.25 -104.60 -0.55 -2.49 16 10 C 0.17 3.42 5.80 -5.19 -0.03 3.39 16 11 N -0.76 -17.45 5.54 -62.90 -0.35 -17.80 16 12 C 0.55 16.00 7.75 -12.99 -0.10 15.90 16 13 O -0.58 -19.10 15.02 5.20 0.08 -19.02 16 14 C -0.54 -15.58 9.54 -35.63 -0.34 -15.92 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -23.31 11.83 55.55 0.66 -22.65 16 18 Si 0.91 20.33 29.56 -169.99 -5.02 15.31 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 C -0.07 -0.98 9.69 -39.61 -0.38 -1.36 16 23 C -0.22 -2.78 5.73 -39.43 -0.23 -3.01 16 24 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 25 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 26 H 0.09 0.86 4.75 -51.93 -0.25 0.61 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.84 4.48 -51.93 -0.23 0.61 16 31 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 32 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.38 7.87 8.44 -40.82 -0.34 7.53 16 38 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 39 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.15 1.51 3.60 -52.48 -0.19 1.32 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -34.54 328.10 -7.39 -41.93 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.59 Total: 7.32 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.91 Total: -6.07 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.31 Total: -40.45 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.11 Total: -22.98 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.54 -7.39 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.342 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds