Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47221 * 2 1 4 4 C 1.52996 * 109.47232 * 239.99632 * 2 1 3 5 5 O 1.42902 * 109.46877 * 119.99252 * 2 1 3 6 6 C 1.35900 * 116.99847 * 62.90877 * 5 2 1 7 7 C 1.38733 * 120.05883 * 175.72326 * 6 5 2 8 8 C 1.38145 * 119.94461 * 180.02562 * 7 6 5 9 9 C 1.38268 * 120.05447 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.93810 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47217 * 90.00485 * 10 9 8 12 12 C 1.34770 * 120.00171 * 180.02562 * 11 10 9 13 13 O 1.21693 * 119.99775 * 359.97438 * 12 11 10 14 14 C 1.46375 * 120.00362 * 179.97438 * 12 11 10 15 15 H 1.07999 * 119.99510 * 359.97438 * 14 12 11 16 16 C 1.40047 * 120.00001 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00225 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99669 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47089 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47157 * 120.00005 * 18 16 14 21 21 H 1.48506 * 109.46685 * 239.99960 * 18 16 14 22 22 C 1.38254 * 120.11418 * 0.25368 * 9 8 7 23 23 C 1.38149 * 120.05522 * 359.44637 * 22 9 8 24 24 H 1.09002 * 109.47133 * 317.84707 * 1 2 3 25 25 H 1.08999 * 109.46929 * 77.84305 * 1 2 3 26 26 H 1.08997 * 109.47781 * 197.84643 * 1 2 3 27 27 H 1.09001 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46634 * 299.99474 * 3 2 1 29 29 H 1.08996 * 109.47111 * 59.99898 * 3 2 1 30 30 H 1.09002 * 109.47220 * 288.10541 * 4 2 1 31 31 H 1.08997 * 109.47012 * 48.10764 * 4 2 1 32 32 H 1.09005 * 109.47044 * 168.10961 * 4 2 1 33 33 H 1.07997 * 120.02792 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.97139 * 180.02562 * 8 7 6 35 35 H 1.09005 * 109.46410 * 209.99508 * 10 9 8 36 36 H 1.08996 * 109.47633 * 329.99601 * 10 9 8 37 37 H 0.96996 * 119.99888 * 359.97438 * 11 10 9 38 38 H 0.97004 * 120.00074 * 180.02562 * 17 16 14 39 39 H 1.08006 * 119.97706 * 179.70307 * 22 9 8 40 40 H 1.08005 * 120.02803 * 180.24957 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0062 -0.6735 1.1669 6 6 1.6919 -1.9898 1.2910 7 6 2.1954 -2.7274 2.3527 8 6 1.8748 -4.0654 2.4762 9 6 1.0533 -4.6698 1.5425 10 6 0.7058 -6.1298 1.6795 11 7 -0.5130 -6.2686 2.4805 12 6 -1.0155 -7.4926 2.7363 13 8 -0.4572 -8.4826 2.3015 14 6 -2.2329 -7.6314 3.5371 15 1 -2.7282 -6.7528 3.9233 16 6 -2.7554 -8.9034 3.8024 17 7 -2.1564 -9.9663 3.3347 18 14 -4.3094 -9.0803 4.8238 19 1 -4.7902 -7.7355 5.2306 20 1 -5.3567 -9.7581 4.0183 21 1 -4.0163 -9.8881 6.0350 22 6 0.5550 -3.9384 0.4803 23 6 0.8676 -2.5985 0.3557 24 1 -0.3633 0.7619 0.6897 25 1 -0.3633 0.2164 -1.0046 26 1 -0.3634 -0.9781 0.3149 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.8600 -1.7917 -1.1496 31 1 1.5141 -0.3445 -2.1264 32 1 3.1092 -0.5416 -1.3614 33 1 2.8374 -2.2559 3.0820 34 1 2.2662 -4.6399 3.3028 35 1 0.5414 -6.5583 0.6908 36 1 1.5253 -6.6539 2.1710 37 1 -0.9578 -5.4795 2.8274 38 1 -2.5185 -10.8473 3.5181 39 1 -0.0826 -4.4139 -0.2504 40 1 0.4748 -2.0266 -0.4720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -67.431988 kcal Electronic energy + Delta-G solvation = -20954.249931 eV Core-core repulsion = 17733.707519 eV Total energy + Delta-G solvation = -3220.542412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81326 -39.72715 -38.70698 -35.51855 -34.90319 -34.37963 -32.07847 -31.47396 -28.81745 -28.35709 -28.13967 -26.20244 -23.78064 -22.76534 -21.68687 -21.21207 -19.36835 -18.29211 -17.57175 -17.32815 -16.69785 -16.28519 -16.08015 -15.85237 -15.57478 -15.04234 -14.88771 -14.83261 -14.47235 -14.20437 -13.93648 -13.37974 -13.22250 -13.15683 -12.96692 -12.92297 -12.83779 -12.70935 -12.65945 -12.55708 -12.35723 -11.97208 -11.69385 -11.57139 -11.31500 -10.94672 -9.93863 -9.89836 -9.48748 -9.04677 -8.28232 -6.85704 0.34532 0.38404 1.40775 1.40943 1.59205 2.22855 2.25435 2.47037 2.67364 3.38069 3.60880 3.71892 3.82996 3.85119 3.90957 3.92105 3.98227 4.31097 4.41544 4.49661 4.59127 4.63800 4.75308 4.76109 4.78570 4.86031 4.91621 4.95503 5.09039 5.15428 5.23365 5.29581 5.30838 5.32462 5.41437 5.71040 5.79499 5.87733 6.21022 6.27118 6.51195 6.86770 7.54320 8.48644 8.67325 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.003167 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.862263 B = 8839.390616 C = 9130.189319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.098 3.902 3 C -0.135 4.135 4 C -0.202 4.202 5 O -0.320 6.320 6 C 0.132 3.868 7 C -0.161 4.161 8 C -0.068 4.068 9 C -0.139 4.139 10 C 0.180 3.820 11 N -0.749 5.749 12 C 0.537 3.463 13 O -0.633 6.633 14 C -0.572 4.572 15 H 0.086 0.914 16 C 0.027 3.973 17 N -0.822 5.822 18 Si 1.000 3.000 19 H -0.248 1.248 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.073 4.073 23 C -0.213 4.213 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.393 0.607 38 H 0.275 0.725 39 H 0.129 0.871 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 23.537 -6.790 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.061 3.939 3 C -0.192 4.192 4 C -0.259 4.259 5 O -0.235 6.235 6 C 0.086 3.914 7 C -0.179 4.179 8 C -0.087 4.087 9 C -0.140 4.140 10 C 0.056 3.944 11 N -0.403 5.403 12 C 0.341 3.659 13 O -0.521 6.521 14 C -0.609 4.609 15 H 0.104 0.896 16 C -0.187 4.187 17 N -0.452 5.452 18 Si 0.819 3.181 19 H -0.170 1.170 20 H -0.192 1.192 21 H -0.193 1.193 22 C -0.091 4.091 23 C -0.231 4.231 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.226 0.774 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.917 22.789 -7.028 24.571 hybrid contribution -0.646 -0.359 0.382 0.832 sum 5.270 22.429 -6.646 23.980 Atomic orbital electron populations 1.22891 0.94301 1.03916 1.04564 1.22108 0.94489 0.93770 0.83531 1.21842 1.02074 0.91331 1.03946 1.22932 1.02829 1.02440 0.97680 1.86130 1.73254 1.19466 1.44616 1.19009 0.94073 0.83645 0.94684 1.20552 1.04598 0.93373 0.99399 1.20961 0.95897 0.94052 0.97780 1.19766 1.01653 0.94748 0.97803 1.19689 0.87795 0.92140 0.94793 1.45897 1.28362 1.08288 1.57796 1.18651 0.85455 0.81325 0.80429 1.90550 1.64379 1.39065 1.58064 1.21448 1.09990 0.94491 1.34930 0.89563 1.26999 1.01613 0.94549 0.95586 1.70194 1.38486 0.99421 1.37087 0.84945 0.75923 0.79738 0.77493 1.17049 1.19237 1.19295 1.21038 0.97555 0.93724 0.96831 1.21993 1.02968 0.95797 1.02366 0.91365 0.88880 0.91132 0.91680 0.88270 0.91688 0.90767 0.88816 0.91591 0.83959 0.85055 0.94068 0.94141 0.77368 0.91525 0.85290 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.84 8.11 71.98 0.58 -2.26 16 2 C 0.10 1.53 1.11 -10.79 -0.01 1.52 16 3 C -0.14 -1.53 8.74 71.98 0.63 -0.91 16 4 C -0.20 -2.82 8.08 71.98 0.58 -2.23 16 5 O -0.32 -7.13 9.79 -92.43 -0.90 -8.04 16 6 C 0.13 3.22 6.06 22.51 0.14 3.36 16 7 C -0.16 -4.11 9.99 22.37 0.22 -3.88 16 8 C -0.07 -1.96 9.69 22.25 0.22 -1.75 16 9 C -0.14 -4.44 5.25 -19.85 -0.10 -4.54 16 10 C 0.18 7.40 5.80 85.63 0.50 7.90 16 11 N -0.75 -35.24 5.54 -471.13 -2.61 -37.85 16 12 C 0.54 32.07 7.75 86.36 0.67 32.74 16 13 O -0.63 -43.52 15.02 -4.33 -0.06 -43.59 16 14 C -0.57 -33.12 9.54 24.83 0.24 -32.89 16 15 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 16 C 0.03 1.55 5.50 85.31 0.47 2.02 16 17 N -0.82 -51.13 11.83 21.83 0.26 -50.87 16 18 Si 1.00 41.47 29.56 68.60 2.03 43.50 16 19 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 C -0.07 -2.02 9.69 22.25 0.22 -1.80 16 23 C -0.21 -4.98 5.73 22.37 0.13 -4.85 16 24 H 0.07 0.94 8.01 -2.39 -0.02 0.93 16 25 H 0.09 0.91 7.84 -2.39 -0.02 0.89 16 26 H 0.07 1.24 4.75 -2.39 -0.01 1.23 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.25 4.48 -2.39 -0.01 1.24 16 31 H 0.09 0.88 7.89 -2.39 -0.02 0.86 16 32 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 33 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.04 1.79 8.08 -2.38 -0.02 1.77 16 36 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.39 16.42 8.44 -92.71 -0.78 15.63 16 38 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 39 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.17 3.12 3.60 -2.91 -0.01 3.11 16 Total: -1.00 -76.94 328.10 3.44 -73.49 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.27 Total: 30.92 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 4.47 Total: -7.56 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.35 Total: -88.73 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.97 Total: -51.62 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -76.94 3.44 -73.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.062 kcal (2) G-P(sol) polarization free energy of solvation -76.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds