Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 C 1.53003 * 109.46991 * 240.00475 * 2 1 3 5 5 O 1.45200 * 109.47584 * 120.00249 * 2 1 3 6 6 C 1.34661 * 116.99791 * 59.99579 * 5 2 1 7 7 O 1.21502 * 120.00489 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99653 * 180.02562 * 6 5 2 9 9 C 1.37196 * 120.00038 * 4.93129 * 8 6 5 10 10 H 1.07994 * 119.99944 * 37.96902 * 9 8 6 11 11 C 1.38888 * 119.99797 * 217.96531 * 9 8 6 12 12 N 1.31459 * 120.00135 * 20.60032 * 11 9 8 13 13 Si 1.86803 * 119.99768 * 200.60289 * 11 9 8 14 14 H 1.48499 * 109.47181 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47393 * 120.00301 * 13 11 9 16 16 H 1.48507 * 109.46832 * 240.00273 * 13 11 9 17 17 C 1.46508 * 120.00068 * 184.93039 * 8 6 5 18 18 C 1.50691 * 109.46978 * 270.00251 * 17 8 6 19 19 C 1.38235 * 120.00075 * 90.00354 * 18 17 8 20 20 C 1.38235 * 120.00334 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99956 * 359.96630 * 20 19 18 22 22 C 1.38243 * 119.99841 * 0.28812 * 21 20 19 23 23 C 1.38229 * 120.00035 * 269.97041 * 18 17 8 24 24 H 1.09001 * 109.47302 * 299.99445 * 1 2 3 25 25 H 1.08997 * 109.47579 * 59.99739 * 1 2 3 26 26 H 1.09003 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47542 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47105 * 300.00551 * 3 2 1 29 29 H 1.09007 * 109.46986 * 59.99983 * 3 2 1 30 30 H 1.09000 * 109.46823 * 299.99204 * 4 2 1 31 31 H 1.08997 * 109.47134 * 59.99514 * 4 2 1 32 32 H 1.08998 * 109.46596 * 179.97438 * 4 2 1 33 33 H 0.97006 * 119.99919 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46920 * 149.99809 * 17 8 6 35 35 H 1.09000 * 109.46552 * 30.00057 * 17 8 6 36 36 H 1.08008 * 119.99906 * 359.96573 * 19 18 17 37 37 H 1.07999 * 120.00021 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00352 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.00102 * 179.72365 * 22 21 20 40 40 H 1.07997 * 120.00190 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9726 1.3383 7 8 0.9515 -2.5099 0.5036 8 7 2.0673 -2.6657 2.4171 9 6 2.7729 -2.0330 3.4091 10 1 2.5150 -1.0243 3.6959 11 6 3.8188 -2.6898 4.0444 12 7 4.3999 -3.7161 3.4637 13 14 4.3996 -2.1150 5.7242 14 1 3.5878 -0.9490 6.1564 15 1 4.2441 -3.2182 6.7060 16 1 5.8291 -1.7203 5.6453 17 6 1.7650 -4.0947 2.5304 18 6 0.4457 -4.2746 3.2361 19 6 -0.7277 -4.3205 2.5068 20 6 -1.9378 -4.4861 3.1541 21 6 -1.9746 -4.6064 4.5307 22 6 -0.8016 -4.5552 5.2605 23 6 0.4090 -4.3944 4.6127 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6765 -0.2073 -2.1392 32 1 3.1299 -0.7207 -1.2495 33 1 5.1307 -4.1746 3.9073 34 1 2.5522 -4.5885 3.1001 35 1 1.7071 -4.5339 1.5345 36 1 -0.6990 -4.2269 1.4312 37 1 -2.8546 -4.5215 2.5843 38 1 -2.9200 -4.7361 5.0364 39 1 -0.8307 -4.6448 6.3364 40 1 1.3257 -4.3587 5.1826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082610204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = -54.426053 kcal Electronic energy + Delta-G solvation = -22501.584165 eV Core-core repulsion = 19281.605733 eV Total energy + Delta-G solvation = -3219.978432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66688 -38.56397 -36.58859 -34.62619 -33.11910 -31.84468 -30.53157 -30.26331 -26.93544 -26.85181 -25.88372 -24.62303 -21.89961 -21.48066 -20.22119 -19.01473 -17.57214 -16.53756 -15.78693 -15.54888 -15.11235 -14.57286 -14.48611 -14.33735 -14.07679 -13.66043 -13.46303 -12.81865 -12.79739 -12.56290 -12.06780 -11.98674 -11.70102 -11.51230 -11.34780 -11.27868 -11.20324 -11.03132 -10.90536 -10.62338 -10.59021 -10.37443 -10.30632 -10.11980 -9.46515 -9.24004 -8.75653 -8.30973 -8.12796 -7.57109 -6.36492 -4.05467 1.93355 2.01833 3.12308 3.23015 3.27855 3.53447 4.10327 4.20368 4.44051 5.00305 5.29462 5.31341 5.43077 5.43849 5.49025 5.54340 5.59964 5.85803 5.88734 5.95751 6.10581 6.11157 6.17592 6.19078 6.29669 6.37664 6.40535 6.45422 6.62052 6.73821 6.82218 6.89980 7.05022 7.06142 7.13202 7.42525 7.49349 7.63135 7.66424 7.95473 8.40813 9.11236 9.45000 10.01414 10.67518 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.008652 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.376206 B = 3235.567384 C = 4849.202157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.132 3.868 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.350 6.350 6 C 0.616 3.384 7 O -0.622 6.622 8 N -0.424 5.424 9 C -0.320 4.320 10 H 0.090 0.910 11 C 0.041 3.959 12 N -0.866 5.866 13 Si 0.911 3.089 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.281 1.281 17 C 0.166 3.834 18 C -0.082 4.082 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.094 4.094 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 2.112 -1.365 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.094 3.906 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.264 6.264 6 C 0.372 3.628 7 O -0.518 6.518 8 N -0.149 5.149 9 C -0.447 4.447 10 H 0.107 0.893 11 C -0.164 4.164 12 N -0.503 5.503 13 Si 0.737 3.263 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.207 1.207 17 C 0.044 3.956 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.469 1.893 -1.598 6.927 hybrid contribution 0.324 0.354 0.842 0.969 sum -6.145 2.246 -0.755 6.586 Atomic orbital electron populations 1.22472 0.95105 1.04877 1.01026 1.21740 0.93610 0.91324 0.83910 1.21789 1.02036 0.93607 1.01994 1.22457 1.01216 1.03660 0.96101 1.86403 1.71042 1.25083 1.43879 1.18374 0.81707 0.80498 0.82197 1.90668 1.45298 1.70785 1.45071 1.42283 1.50039 1.07196 1.15419 1.19459 1.11853 1.00917 1.12507 0.89271 1.25331 0.94577 0.96902 0.99563 1.69945 1.21660 1.22104 1.36599 0.86116 0.78621 0.79058 0.82467 1.19136 1.20440 1.20727 1.20378 0.92912 0.82340 1.00001 1.20625 0.96573 0.97068 0.94029 1.21284 0.91902 0.98228 1.00527 1.21044 0.97571 1.02067 0.94530 1.20973 0.97607 1.02292 0.94276 1.21053 0.92865 1.02000 0.99198 1.21131 0.97685 0.98107 0.94363 0.92916 0.92504 0.89204 0.91793 0.91253 0.91972 0.89207 0.92572 0.92680 0.92145 0.86523 0.91632 0.85641 0.87030 0.87147 0.86906 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.37 37.15 0.31 -2.74 16 2 C 0.13 2.44 1.13 -90.62 -0.10 2.34 16 3 C -0.14 -2.03 8.85 37.16 0.33 -1.70 16 4 C -0.18 -3.11 8.37 37.16 0.31 -2.80 16 5 O -0.35 -8.18 9.07 -40.38 -0.37 -8.54 16 6 C 0.62 15.35 7.64 54.06 0.41 15.76 16 7 O -0.62 -15.20 10.71 -19.27 -0.21 -15.41 16 8 N -0.42 -10.82 2.50 -121.52 -0.30 -11.13 16 9 C -0.32 -8.39 8.88 -14.91 -0.13 -8.52 16 10 H 0.09 2.39 7.81 -52.49 -0.41 1.98 16 11 C 0.04 1.04 4.97 -17.47 -0.09 0.95 16 12 N -0.87 -22.63 11.45 55.49 0.64 -21.99 16 13 Si 0.91 19.71 29.60 -169.99 -5.03 14.68 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.17 3.91 5.09 -5.19 -0.03 3.89 16 18 C -0.08 -1.72 5.46 -104.63 -0.57 -2.30 16 19 C -0.10 -1.97 9.57 -39.58 -0.38 -2.35 16 20 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 21 C -0.13 -2.12 10.05 -39.58 -0.40 -2.51 16 22 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 23 C -0.09 -1.85 9.70 -39.58 -0.38 -2.24 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.77 5.88 -51.93 -0.31 1.47 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.09 1.81 5.88 -51.93 -0.31 1.50 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.12 2.89 5.46 -51.93 -0.28 2.61 16 35 H 0.07 1.55 7.44 -51.93 -0.39 1.17 16 36 H 0.13 2.53 7.38 -52.48 -0.39 2.14 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -28.21 330.23 -7.67 -35.88 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.86 Total: 9.07 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.51 Total: -7.53 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.33 Total: -33.12 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.57 Total: -23.95 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.21 -7.67 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082610204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.548 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds