Wall clock time and date at job start Mon Mar 30 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 C 1.53003 * 109.46991 * 240.00475 * 2 1 3 5 5 O 1.45200 * 109.47584 * 120.00249 * 2 1 3 6 6 C 1.34661 * 116.99791 * 59.99579 * 5 2 1 7 7 O 1.21502 * 120.00489 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99653 * 180.02562 * 6 5 2 9 9 C 1.37196 * 120.00038 * 4.93129 * 8 6 5 10 10 H 1.07994 * 119.99944 * 37.96902 * 9 8 6 11 11 C 1.38888 * 119.99797 * 217.96531 * 9 8 6 12 12 N 1.31459 * 120.00135 * 20.60032 * 11 9 8 13 13 Si 1.86803 * 119.99768 * 200.60289 * 11 9 8 14 14 H 1.48499 * 109.47181 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47393 * 120.00301 * 13 11 9 16 16 H 1.48507 * 109.46832 * 240.00273 * 13 11 9 17 17 C 1.46508 * 120.00068 * 184.93039 * 8 6 5 18 18 C 1.50691 * 109.46978 * 270.00251 * 17 8 6 19 19 C 1.38235 * 120.00075 * 90.00354 * 18 17 8 20 20 C 1.38235 * 120.00334 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99956 * 359.96630 * 20 19 18 22 22 C 1.38243 * 119.99841 * 0.28812 * 21 20 19 23 23 C 1.38229 * 120.00035 * 269.97041 * 18 17 8 24 24 H 1.09001 * 109.47302 * 299.99445 * 1 2 3 25 25 H 1.08997 * 109.47579 * 59.99739 * 1 2 3 26 26 H 1.09003 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47542 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47105 * 300.00551 * 3 2 1 29 29 H 1.09007 * 109.46986 * 59.99983 * 3 2 1 30 30 H 1.09000 * 109.46823 * 299.99204 * 4 2 1 31 31 H 1.08997 * 109.47134 * 59.99514 * 4 2 1 32 32 H 1.08998 * 109.46596 * 179.97438 * 4 2 1 33 33 H 0.97006 * 119.99919 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46920 * 149.99809 * 17 8 6 35 35 H 1.09000 * 109.46552 * 30.00057 * 17 8 6 36 36 H 1.08008 * 119.99906 * 359.96573 * 19 18 17 37 37 H 1.07999 * 120.00021 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00352 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.00102 * 179.72365 * 22 21 20 40 40 H 1.07997 * 120.00190 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9726 1.3383 7 8 0.9515 -2.5099 0.5036 8 7 2.0673 -2.6657 2.4171 9 6 2.7729 -2.0330 3.4091 10 1 2.5150 -1.0243 3.6959 11 6 3.8188 -2.6898 4.0444 12 7 4.3999 -3.7161 3.4637 13 14 4.3996 -2.1150 5.7242 14 1 3.5878 -0.9490 6.1564 15 1 4.2441 -3.2182 6.7060 16 1 5.8291 -1.7203 5.6453 17 6 1.7650 -4.0947 2.5304 18 6 0.4457 -4.2746 3.2361 19 6 -0.7277 -4.3205 2.5068 20 6 -1.9378 -4.4861 3.1541 21 6 -1.9746 -4.6064 4.5307 22 6 -0.8016 -4.5552 5.2605 23 6 0.4090 -4.3944 4.6127 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6765 -0.2073 -2.1392 32 1 3.1299 -0.7207 -1.2495 33 1 5.1307 -4.1746 3.9073 34 1 2.5522 -4.5885 3.1001 35 1 1.7071 -4.5339 1.5345 36 1 -0.6990 -4.2269 1.4312 37 1 -2.8546 -4.5215 2.5843 38 1 -2.9200 -4.7361 5.0364 39 1 -0.8307 -4.6448 6.3364 40 1 1.3257 -4.3587 5.1826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082610204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:16 Heat of formation + Delta-G solvation = -68.259695 kcal Electronic energy + Delta-G solvation = -22502.184037 eV Core-core repulsion = 19281.605733 eV Total energy + Delta-G solvation = -3220.578304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43283 -40.05235 -38.26551 -36.49525 -34.70139 -33.70460 -32.17118 -31.68281 -28.26107 -28.21453 -27.65383 -26.51387 -23.32860 -23.07746 -21.79812 -20.81021 -19.32948 -18.25948 -17.39174 -17.27175 -16.84065 -16.35389 -15.95076 -15.84933 -15.74024 -15.16067 -15.10646 -14.34207 -14.20951 -14.09835 -13.59950 -13.24094 -13.22112 -13.09720 -13.04714 -12.81430 -12.71923 -12.67388 -12.52850 -12.25427 -12.15990 -11.95027 -11.90496 -11.73574 -11.11548 -11.08510 -10.60333 -9.73101 -9.59677 -9.50949 -8.30896 -6.07389 0.48944 0.59055 1.39488 1.44528 1.57372 1.86806 2.22346 2.39084 2.95773 3.10007 3.82547 3.92096 3.93666 4.06209 4.09578 4.13553 4.24757 4.38120 4.49597 4.64694 4.67460 4.74510 4.81437 4.81923 4.86886 4.95346 4.95968 5.13709 5.14408 5.21959 5.29013 5.39432 5.42491 5.52332 5.65613 5.66248 5.78041 5.95294 6.10035 6.22625 6.41572 7.13922 7.52155 8.10797 8.73551 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.008652 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.376206 B = 3235.567384 C = 4849.202157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 C -0.130 4.130 4 C -0.170 4.170 5 O -0.371 6.371 6 C 0.608 3.392 7 O -0.627 6.627 8 N -0.437 5.437 9 C -0.339 4.339 10 H 0.077 0.923 11 C 0.008 3.992 12 N -0.893 5.893 13 Si 0.976 3.024 14 H -0.264 1.264 15 H -0.268 1.268 16 H -0.279 1.279 17 C 0.174 3.826 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.273 0.727 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 3.176 -0.310 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.076 3.924 3 C -0.187 4.187 4 C -0.228 4.228 5 O -0.286 6.286 6 C 0.364 3.636 7 O -0.524 6.524 8 N -0.163 5.163 9 C -0.466 4.466 10 H 0.095 0.905 11 C -0.195 4.195 12 N -0.531 5.531 13 Si 0.799 3.201 14 H -0.189 1.189 15 H -0.192 1.192 16 H -0.205 1.205 17 C 0.052 3.948 18 C -0.107 4.107 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.160 0.840 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.205 2.958 -0.559 8.740 hybrid contribution 0.799 0.025 0.427 0.907 sum -7.406 2.982 -0.132 7.985 Atomic orbital electron populations 1.22375 0.94158 1.03333 1.02764 1.22347 0.94683 0.92870 0.82546 1.21816 1.01826 0.91096 1.03944 1.22380 1.00685 1.02184 0.97513 1.86383 1.71522 1.24328 1.46371 1.18554 0.81740 0.81180 0.82152 1.90654 1.45433 1.71168 1.45132 1.42519 1.50390 1.07765 1.15668 1.19486 1.12792 1.00937 1.13435 0.90522 1.26076 0.94161 0.96761 1.02456 1.70032 1.22069 1.23002 1.37986 0.85153 0.77912 0.78870 0.78178 1.18852 1.19245 1.20465 1.20192 0.94220 0.81476 0.98912 1.20439 0.95700 0.99646 0.94905 1.21224 0.92842 0.99751 0.99827 1.21391 0.97334 1.00451 0.95544 1.21456 0.98980 0.99701 0.93737 1.21417 0.91899 1.00282 1.00933 1.21132 0.98774 0.99534 0.93656 0.93064 0.88759 0.92308 0.92184 0.87374 0.91878 0.92450 0.88684 0.93403 0.91738 0.88250 0.93493 0.87373 0.83977 0.82778 0.83652 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.37 71.98 0.60 -5.08 16 2 C 0.11 4.11 1.13 -10.79 -0.01 4.10 16 3 C -0.13 -3.60 8.85 71.98 0.64 -2.96 16 4 C -0.17 -5.95 8.37 71.98 0.60 -5.34 16 5 O -0.37 -17.96 9.07 -55.70 -0.51 -18.46 16 6 C 0.61 31.81 7.64 129.79 0.99 32.80 16 7 O -0.63 -32.39 10.71 19.83 0.21 -32.18 16 8 N -0.44 -23.54 2.50 -768.77 -1.92 -25.47 16 9 C -0.34 -18.50 8.88 84.01 0.75 -17.76 16 10 H 0.08 4.27 7.81 -2.91 -0.02 4.25 16 11 C 0.01 0.42 4.97 84.90 0.42 0.84 16 12 N -0.89 -48.28 11.45 21.65 0.25 -48.03 16 13 Si 0.98 40.83 29.60 68.60 2.03 42.86 16 14 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 15 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 17 C 0.17 8.77 5.09 85.63 0.44 9.21 16 18 C -0.11 -4.64 5.46 -19.87 -0.11 -4.75 16 19 C -0.12 -4.71 9.57 22.27 0.21 -4.49 16 20 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 21 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 22 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 23 C -0.11 -4.45 9.70 22.27 0.22 -4.23 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.06 2.35 5.88 -2.39 -0.01 2.34 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 2.38 5.88 -2.39 -0.01 2.37 16 31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 34 H 0.10 5.27 5.46 -2.39 -0.01 5.26 16 35 H 0.05 2.43 7.44 -2.39 -0.02 2.41 16 36 H 0.11 4.60 7.38 -2.91 -0.02 4.58 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -64.67 330.23 6.50 -58.18 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 1.02 Total: 31.59 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.42 Total: -8.48 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.68 Total: -73.50 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.29 Total: -50.64 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -64.67 6.50 -58.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082610204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.084 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds