Wall clock time and date at job start Mon Mar 30 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47007 * 2 1 4 4 C 1.53004 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47334 * 179.97438 * 4 3 2 6 6 C 1.42895 * 114.00309 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47301 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00162 * 354.93831 * 7 6 5 9 9 N 1.34781 * 120.00051 * 174.93114 * 7 6 5 10 10 C 1.37134 * 119.99747 * 5.68153 * 9 7 6 11 11 H 1.08007 * 120.00086 * 55.67052 * 10 9 7 12 12 C 1.38889 * 120.00153 * 235.66069 * 10 9 7 13 13 N 1.31418 * 119.99663 * 9.25380 * 12 10 9 14 14 Si 1.86798 * 120.00394 * 189.24582 * 12 10 9 15 15 H 1.48491 * 109.47227 * 90.00278 * 14 12 10 16 16 H 1.48507 * 109.47111 * 210.00744 * 14 12 10 17 17 H 1.48499 * 109.47063 * 330.00211 * 14 12 10 18 18 C 1.39790 * 120.00031 * 185.67781 * 9 7 6 19 19 C 1.38953 * 120.07496 * 175.19396 * 18 9 7 20 20 C 1.38084 * 119.92134 * 179.97438 * 19 18 9 21 21 C 1.38310 * 120.07408 * 0.02562 * 20 19 18 22 22 C 1.38304 * 120.16015 * 359.97438 * 21 20 19 23 23 C 1.38082 * 120.07567 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47518 * 299.99969 * 1 2 3 25 25 H 1.08995 * 109.46997 * 60.00481 * 1 2 3 26 26 H 1.09009 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47585 * 239.99556 * 2 1 3 28 28 H 1.09001 * 109.47049 * 119.99967 * 2 1 3 29 29 H 1.08999 * 109.47311 * 60.00093 * 3 2 1 30 30 H 1.08995 * 109.46849 * 299.99609 * 3 2 1 31 31 H 1.08999 * 109.46604 * 60.00083 * 4 3 2 32 32 H 1.09001 * 109.47335 * 300.00215 * 4 3 2 33 33 H 1.09000 * 109.47469 * 60.00081 * 6 5 4 34 34 H 1.09002 * 109.46984 * 300.00187 * 6 5 4 35 35 H 0.97003 * 120.00073 * 184.98173 * 13 12 10 36 36 H 1.07997 * 120.04181 * 359.70165 * 19 18 9 37 37 H 1.07992 * 119.96750 * 179.97438 * 20 19 18 38 38 H 1.08009 * 119.92032 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.96593 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.04141 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.4708 2.9026 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0049 5.2144 -0.0927 9 7 7.1565 4.7100 0.1031 10 6 8.1312 3.7454 0.0906 11 1 8.1911 3.0489 -0.7327 12 6 9.0414 3.6643 1.1365 13 7 8.8630 4.3860 2.2202 14 14 10.5189 2.5292 1.0031 15 1 11.6570 3.2670 0.3987 16 1 10.9008 2.0525 2.3567 17 1 10.1734 1.3654 0.1478 18 6 7.5082 6.0576 0.2226 19 6 8.8349 6.4153 0.4291 20 6 9.1789 7.7475 0.5462 21 6 8.2046 8.7252 0.4587 22 6 6.8831 8.3728 0.2532 23 6 6.5319 7.0426 0.1352 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9562 -0.8900 31 1 3.9336 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.8736 2.4187 -0.8898 34 1 5.8736 2.4194 0.8902 35 1 9.5349 4.3848 2.9198 36 1 9.5956 5.6522 0.5023 37 1 10.2098 8.0263 0.7071 38 1 8.4763 9.7665 0.5511 39 1 6.1248 9.1388 0.1850 40 1 5.4997 6.7680 -0.0248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084746675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:15 Heat of formation + Delta-G solvation = -47.123481 kcal Electronic energy + Delta-G solvation = -21366.268266 eV Core-core repulsion = 18146.606497 eV Total energy + Delta-G solvation = -3219.661769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.72312 -37.84527 -36.83430 -35.05112 -34.77496 -31.99956 -29.92254 -29.58166 -28.86642 -26.47964 -25.15857 -23.16643 -21.71339 -21.23734 -21.00909 -19.46579 -17.83567 -16.52702 -16.20847 -15.59451 -15.49675 -15.20580 -14.89006 -14.69520 -14.04643 -13.83667 -13.49657 -13.06476 -12.96338 -12.64693 -12.61031 -12.28313 -11.88660 -11.70263 -11.49434 -11.28390 -11.23068 -11.14962 -11.12210 -10.85522 -10.70480 -10.62850 -10.50192 -10.02904 -9.26275 -9.22513 -8.77423 -8.09271 -7.78511 -6.91156 -6.34049 -4.60650 2.42630 2.57578 3.00143 3.08332 3.10730 3.56839 3.80834 3.96264 4.68331 4.71723 4.89121 5.03113 5.12240 5.19931 5.31195 5.52421 5.59725 5.73700 5.77647 5.79284 5.84660 5.88119 5.89047 6.03335 6.06146 6.10912 6.17587 6.25141 6.30907 6.71616 6.74290 6.91396 7.14381 7.19788 7.50543 7.53960 7.62861 7.70708 7.78530 8.02885 8.43310 8.80314 9.22400 9.59203 10.42923 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.004930 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.193359 B = 5678.422316 C = 7182.844105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.061 3.939 5 O -0.372 6.372 6 C 0.067 3.933 7 C 0.497 3.503 8 O -0.547 6.547 9 N -0.383 5.383 10 C -0.375 4.375 11 H 0.094 0.906 12 C 0.057 3.943 13 N -0.839 5.839 14 Si 0.915 3.085 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.186 3.814 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.174 4.174 22 C -0.120 4.120 23 C -0.193 4.193 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.276 0.724 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -5.929 -2.775 8.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.016 4.016 5 O -0.290 6.290 6 C -0.012 4.012 7 C 0.288 3.712 8 O -0.430 6.430 9 N -0.093 5.093 10 C -0.502 4.502 11 H 0.111 0.889 12 C -0.153 4.153 13 N -0.470 5.470 14 Si 0.740 3.260 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.189 1.189 18 C 0.089 3.911 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.193 4.193 22 C -0.139 4.139 23 C -0.212 4.212 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.817 -5.467 -2.585 8.391 hybrid contribution 1.336 -0.739 0.266 1.550 sum -4.481 -6.206 -2.319 7.998 Atomic orbital electron populations 1.21752 0.95630 1.01423 1.02039 1.21445 0.96026 0.96364 1.02105 1.21528 0.93823 0.96769 1.03479 1.22485 0.94820 0.84389 0.99903 1.87930 1.20433 1.25200 1.95465 1.21969 0.81026 0.95688 1.02508 1.20474 0.82514 0.89935 0.78280 1.90195 1.50651 1.50297 1.51824 1.40860 1.04396 1.03689 1.60326 1.19362 1.11465 1.12796 1.06592 0.88872 1.25639 0.99577 0.96561 0.93571 1.70038 1.33611 1.37737 1.05623 0.86113 0.81237 0.80536 0.78109 1.19645 1.20494 1.18908 1.18257 0.93143 0.83911 0.95796 1.21012 0.95920 0.95437 1.00317 1.20763 0.98092 0.93030 1.02364 1.20794 0.93806 0.97902 1.06798 1.20871 0.95424 0.95907 1.01660 1.22814 1.03080 0.91698 1.03638 0.92623 0.92643 0.92835 0.91935 0.91894 0.91105 0.91141 0.93675 0.93536 0.91098 0.90022 0.91388 0.85093 0.87770 0.88162 0.87674 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.34 16 3 C -0.12 -1.47 5.58 -26.73 -0.15 -1.62 16 4 C 0.06 0.89 5.94 37.16 0.22 1.11 16 5 O -0.37 -7.32 9.88 -55.09 -0.54 -7.86 16 6 C 0.07 1.37 5.24 36.01 0.19 1.56 16 7 C 0.50 12.24 7.64 -10.98 -0.08 12.15 16 8 O -0.55 -14.41 12.90 -14.30 -0.18 -14.60 16 9 N -0.38 -9.75 2.62 -58.98 -0.15 -9.90 16 10 C -0.38 -9.10 7.61 -14.94 -0.11 -9.22 16 11 H 0.09 2.12 7.85 -52.48 -0.41 1.71 16 12 C 0.06 1.35 3.49 -17.49 -0.06 1.29 16 13 N -0.84 -21.53 11.39 55.49 0.63 -20.90 16 14 Si 0.92 18.18 29.57 -169.99 -5.03 13.15 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 C 0.19 4.75 6.05 -83.70 -0.51 4.24 16 19 C -0.11 -2.57 7.87 -39.37 -0.31 -2.88 16 20 C -0.12 -2.63 10.04 -39.61 -0.40 -3.03 16 21 C -0.17 -3.51 10.04 -39.53 -0.40 -3.91 16 22 C -0.12 -2.56 10.04 -39.61 -0.40 -2.95 16 23 C -0.19 -4.71 9.06 -39.37 -0.36 -5.07 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.65 8.05 -51.93 -0.42 1.23 16 35 H 0.28 6.68 8.32 -40.82 -0.34 6.34 16 36 H 0.13 3.25 5.15 -52.49 -0.27 2.98 16 37 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.18 4.45 4.50 -56.37 -0.25 4.19 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -28.80 331.59 -8.42 -37.22 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.99 Total: 8.48 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.15 Total: -10.58 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.48 Total: -30.80 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.73 Total: -22.46 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.80 -8.42 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084746675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.902 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds