Wall clock time and date at job start Mon Mar 30 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47007 * 2 1 4 4 C 1.53004 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47334 * 179.97438 * 4 3 2 6 6 C 1.42895 * 114.00309 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47301 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00162 * 354.93831 * 7 6 5 9 9 N 1.34781 * 120.00051 * 174.93114 * 7 6 5 10 10 C 1.37134 * 119.99747 * 5.68153 * 9 7 6 11 11 H 1.08007 * 120.00086 * 55.67052 * 10 9 7 12 12 C 1.38889 * 120.00153 * 235.66069 * 10 9 7 13 13 N 1.31418 * 119.99663 * 9.25380 * 12 10 9 14 14 Si 1.86798 * 120.00394 * 189.24582 * 12 10 9 15 15 H 1.48491 * 109.47227 * 90.00278 * 14 12 10 16 16 H 1.48507 * 109.47111 * 210.00744 * 14 12 10 17 17 H 1.48499 * 109.47063 * 330.00211 * 14 12 10 18 18 C 1.39790 * 120.00031 * 185.67781 * 9 7 6 19 19 C 1.38953 * 120.07496 * 175.19396 * 18 9 7 20 20 C 1.38084 * 119.92134 * 179.97438 * 19 18 9 21 21 C 1.38310 * 120.07408 * 0.02562 * 20 19 18 22 22 C 1.38304 * 120.16015 * 359.97438 * 21 20 19 23 23 C 1.38082 * 120.07567 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47518 * 299.99969 * 1 2 3 25 25 H 1.08995 * 109.46997 * 60.00481 * 1 2 3 26 26 H 1.09009 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47585 * 239.99556 * 2 1 3 28 28 H 1.09001 * 109.47049 * 119.99967 * 2 1 3 29 29 H 1.08999 * 109.47311 * 60.00093 * 3 2 1 30 30 H 1.08995 * 109.46849 * 299.99609 * 3 2 1 31 31 H 1.08999 * 109.46604 * 60.00083 * 4 3 2 32 32 H 1.09001 * 109.47335 * 300.00215 * 4 3 2 33 33 H 1.09000 * 109.47469 * 60.00081 * 6 5 4 34 34 H 1.09002 * 109.46984 * 300.00187 * 6 5 4 35 35 H 0.97003 * 120.00073 * 184.98173 * 13 12 10 36 36 H 1.07997 * 120.04181 * 359.70165 * 19 18 9 37 37 H 1.07992 * 119.96750 * 179.97438 * 20 19 18 38 38 H 1.08009 * 119.92032 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.96593 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.04141 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.4708 2.9026 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0049 5.2144 -0.0927 9 7 7.1565 4.7100 0.1031 10 6 8.1312 3.7454 0.0906 11 1 8.1911 3.0489 -0.7327 12 6 9.0414 3.6643 1.1365 13 7 8.8630 4.3860 2.2202 14 14 10.5189 2.5292 1.0031 15 1 11.6570 3.2670 0.3987 16 1 10.9008 2.0525 2.3567 17 1 10.1734 1.3654 0.1478 18 6 7.5082 6.0576 0.2226 19 6 8.8349 6.4153 0.4291 20 6 9.1789 7.7475 0.5462 21 6 8.2046 8.7252 0.4587 22 6 6.8831 8.3728 0.2532 23 6 6.5319 7.0426 0.1352 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9562 -0.8900 31 1 3.9336 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.8736 2.4187 -0.8898 34 1 5.8736 2.4194 0.8902 35 1 9.5349 4.3848 2.9198 36 1 9.5956 5.6522 0.5023 37 1 10.2098 8.0263 0.7071 38 1 8.4763 9.7665 0.5511 39 1 6.1248 9.1388 0.1850 40 1 5.4997 6.7680 -0.0248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084746675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:15 Heat of formation + Delta-G solvation = -61.490540 kcal Electronic energy + Delta-G solvation = -21366.891269 eV Core-core repulsion = 18146.606497 eV Total energy + Delta-G solvation = -3220.284772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53696 -39.39338 -38.43452 -36.86299 -35.78962 -33.85769 -31.48229 -31.26508 -30.15601 -28.04967 -26.98947 -24.19975 -23.44764 -22.89523 -22.03940 -21.26304 -19.61710 -18.20890 -17.63058 -17.24137 -17.06041 -16.82529 -16.36716 -16.18286 -15.54706 -15.26879 -14.85366 -14.75286 -14.41064 -14.05195 -13.94975 -13.83681 -13.44940 -13.27433 -13.05494 -12.82319 -12.75656 -12.44207 -12.38975 -12.09223 -11.94992 -11.85444 -11.72882 -11.51820 -11.06688 -10.64044 -10.57156 -9.94331 -9.54814 -8.73879 -8.16109 -6.49358 0.65757 0.80074 1.42927 1.46525 1.57602 1.87315 2.14541 2.35319 2.89884 3.22601 3.34145 3.96460 3.98908 4.12919 4.23618 4.28294 4.31534 4.37286 4.41453 4.47011 4.48552 4.59424 4.71123 4.92076 4.92966 4.95218 4.98734 5.04994 5.14507 5.24269 5.34137 5.35590 5.41160 5.45568 5.78239 5.87272 5.87593 6.00973 6.18491 6.23112 6.61059 6.96115 7.37110 7.74718 8.62914 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.004930 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.193359 B = 5678.422316 C = 7182.844105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.115 4.115 4 C 0.052 3.948 5 O -0.399 6.399 6 C 0.081 3.919 7 C 0.476 3.524 8 O -0.577 6.577 9 N -0.394 5.394 10 C -0.389 4.389 11 H 0.104 0.896 12 C 0.023 3.977 13 N -0.876 5.876 14 Si 0.983 3.017 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.251 1.251 18 C 0.151 3.849 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.163 4.163 22 C -0.120 4.120 23 C -0.220 4.220 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.276 0.724 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -6.392 -3.095 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.024 4.024 5 O -0.319 6.319 6 C 0.002 3.998 7 C 0.268 3.732 8 O -0.462 6.462 9 N -0.103 5.103 10 C -0.515 4.515 11 H 0.121 0.879 12 C -0.184 4.184 13 N -0.509 5.509 14 Si 0.805 3.195 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.174 1.174 18 C 0.055 3.945 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.182 4.182 22 C -0.138 4.138 23 C -0.239 4.239 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.916 -5.940 -2.920 8.245 hybrid contribution 1.016 -0.504 0.365 1.191 sum -3.900 -6.444 -2.555 7.954 Atomic orbital electron populations 1.21757 0.94740 1.02400 1.01943 1.21425 0.96751 0.94253 1.02940 1.21553 0.92408 0.98716 1.02634 1.22822 0.96022 0.82295 1.01225 1.87904 1.19783 1.28500 1.95682 1.21787 0.81858 0.92851 1.03290 1.21279 0.82282 0.91666 0.77925 1.90172 1.51291 1.51491 1.53227 1.41125 1.04906 1.04120 1.60147 1.19735 1.11625 1.12953 1.07221 0.87860 1.26421 1.01776 0.97475 0.92698 1.70158 1.34641 1.39538 1.06519 0.85079 0.77548 0.78872 0.77985 1.19337 1.20727 1.17396 1.18652 0.94147 0.84431 0.97288 1.21066 0.95122 0.96694 1.01679 1.21174 1.00092 0.92053 1.00874 1.21239 0.92768 0.99824 1.04388 1.21240 0.97088 0.95187 1.00294 1.22812 1.02303 0.93295 1.05510 0.92891 0.92657 0.91301 0.90890 0.91244 0.92235 0.91774 0.91833 0.92568 0.89000 0.90124 0.91417 0.86288 0.84668 0.83834 0.84701 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.12 -2.07 5.93 30.59 0.18 -1.89 16 3 C -0.12 -2.83 5.58 30.60 0.17 -2.66 16 4 C 0.05 1.49 5.94 71.98 0.43 1.92 16 5 O -0.40 -15.99 9.88 -129.99 -1.28 -17.27 16 6 C 0.08 3.36 5.24 71.24 0.37 3.74 16 7 C 0.48 24.36 7.64 87.66 0.67 25.03 16 8 O -0.58 -31.93 12.90 15.95 0.21 -31.73 16 9 N -0.39 -20.64 2.62 -458.89 -1.20 -21.84 16 10 C -0.39 -19.10 7.61 84.02 0.64 -18.46 16 11 H 0.10 4.70 7.85 -2.91 -0.02 4.67 16 12 C 0.02 1.10 3.49 84.91 0.30 1.40 16 13 N -0.88 -45.65 11.39 21.65 0.25 -45.41 16 14 Si 0.98 36.79 29.57 68.60 2.03 38.82 16 15 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 16 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 18 C 0.15 7.94 6.05 38.22 0.23 8.17 16 19 C -0.12 -6.07 7.87 22.40 0.18 -5.89 16 20 C -0.12 -5.03 10.04 22.25 0.22 -4.81 16 21 C -0.16 -6.14 10.04 22.30 0.22 -5.92 16 22 C -0.12 -4.95 10.04 22.25 0.22 -4.73 16 23 C -0.22 -10.99 9.06 22.41 0.20 -10.79 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.08 3.31 8.05 -2.39 -0.02 3.29 16 35 H 0.28 13.54 8.32 -92.71 -0.77 12.77 16 36 H 0.12 5.98 5.15 -2.91 -0.02 5.96 16 37 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.16 8.38 4.50 -64.48 -0.29 8.09 16 Total: -1.00 -64.04 331.59 5.49 -58.55 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.74 Total: 35.41 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.75 Total: -16.53 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.96 Total: -67.25 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -1.08 Total: -49.00 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -64.04 5.49 -58.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084746675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.940 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds