Wall clock time and date at job start Mon Mar 30 2020 01:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 C 1.52996 * 109.47102 * 119.99850 * 2 1 3 5 5 N 1.46500 * 109.47128 * 174.99824 * 4 2 1 6 6 C 1.34774 * 120.00119 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47208 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97915 * 9 8 6 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99715 * 9 8 6 24 24 H 1.08996 * 109.47044 * 300.00047 * 1 2 3 25 25 H 1.09001 * 109.47212 * 59.99909 * 1 2 3 26 26 H 1.08997 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46695 * 240.00185 * 2 1 3 28 28 H 1.09003 * 109.47312 * 60.00563 * 3 2 1 29 29 H 1.09003 * 109.46804 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47278 * 300.00050 * 3 2 1 31 31 H 1.09008 * 109.46644 * 55.00149 * 4 2 1 32 32 H 1.08998 * 109.47635 * 295.00345 * 4 2 1 33 33 H 0.97001 * 119.99420 * 0.02562 * 5 4 2 34 34 H 1.09002 * 109.46571 * 59.99894 * 8 6 5 35 35 H 1.08992 * 109.46782 * 300.00158 * 8 6 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4291 2.1906 7 8 3.5699 -1.8849 3.1390 8 6 5.6750 -1.5368 2.1306 9 6 6.1773 -2.2484 3.3604 10 6 6.5060 -1.5239 4.4919 11 6 6.9676 -2.1731 5.6222 12 6 7.0957 -3.5483 5.6265 13 6 6.7720 -4.2780 4.4903 14 8 6.9026 -5.6292 4.4895 15 6 7.4648 -6.1905 5.5790 16 1 7.7131 -5.5793 6.4340 17 6 7.7240 -7.5524 5.6015 18 7 7.4219 -8.2968 4.5598 19 14 8.5035 -8.3299 7.1105 20 1 7.4381 -8.7691 8.0472 21 1 9.3157 -9.5032 6.6993 22 1 9.3763 -7.3355 7.7848 23 6 6.3092 -3.6228 3.3563 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1370 33 1 3.9824 -0.4621 0.4318 34 1 6.1093 -0.5381 2.0854 35 1 5.9637 -2.0991 1.2426 36 1 6.4018 -0.4489 4.4927 37 1 7.2238 -1.6047 6.5039 38 1 7.4515 -4.0553 6.5113 39 1 7.6036 -9.2495 4.5754 40 1 6.0531 -4.1878 2.4723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089600365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:57 Heat of formation + Delta-G solvation = -58.246786 kcal Electronic energy + Delta-G solvation = -20569.783264 eV Core-core repulsion = 17349.639152 eV Total energy + Delta-G solvation = -3220.144112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81391 -38.76213 -36.96922 -36.23743 -33.31486 -32.31232 -31.85480 -29.16351 -27.64802 -27.53583 -25.68661 -25.03329 -21.63009 -21.14965 -20.76155 -19.96828 -17.62261 -17.03427 -16.76942 -16.15601 -15.66422 -15.07631 -14.83575 -14.33721 -14.22081 -14.11962 -13.73697 -13.46012 -13.26352 -13.07867 -12.76713 -12.54524 -12.34013 -12.33110 -11.75630 -11.48760 -11.46681 -11.23209 -11.20779 -11.05291 -10.76468 -10.71781 -10.54979 -10.39564 -9.66897 -9.26707 -9.05268 -8.77310 -7.98656 -7.14171 -6.37802 -3.96669 2.17202 2.47043 2.85112 3.16851 3.17806 3.22745 3.29396 4.02468 4.43196 4.54238 4.61343 4.69722 4.97197 5.15742 5.18180 5.20834 5.27286 5.30756 5.38213 5.47303 5.54675 5.60656 5.64369 5.73675 5.77469 5.82548 5.91798 5.97676 6.00983 6.25252 6.41461 6.44307 6.73652 6.99593 7.14511 7.34559 7.44154 7.50885 7.53303 7.90854 8.07549 8.39505 9.08075 9.79722 10.80657 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031628 B = 0.003108 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.079338 B = 9005.843801 C = 9516.559476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.123 3.877 5 N -0.739 5.739 6 C 0.512 3.488 7 O -0.519 6.519 8 C -0.094 4.094 9 C -0.033 4.033 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.174 4.174 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 17.524 -9.304 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.206 4.206 4 C -0.001 4.001 5 N -0.393 5.393 6 C 0.298 3.702 7 O -0.393 6.393 8 C -0.134 4.134 9 C -0.033 4.033 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.084 6.084 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.194 4.194 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.867 16.749 -8.819 20.499 hybrid contribution 0.569 -0.195 0.437 0.743 sum -7.299 16.554 -8.382 19.939 Atomic orbital electron populations 1.21766 0.94118 1.02297 1.02148 1.21360 0.96710 0.96651 0.98020 1.21871 1.01096 0.95593 1.02036 1.21385 0.80265 1.00668 0.97767 1.46061 1.07507 1.61490 1.24290 1.20767 0.90106 0.77277 0.82024 1.90760 1.70122 1.45691 1.32768 1.20591 0.91505 1.02334 0.98949 1.18666 0.98373 0.92604 0.93702 1.20347 1.08873 0.98168 0.94144 1.20674 0.97769 0.93928 0.96973 1.21170 1.10063 0.94205 0.99596 1.19275 0.92796 0.84890 0.92890 1.83976 1.69489 1.13778 1.41172 1.21316 1.39930 0.92106 0.93297 0.89146 1.25269 0.97277 0.95305 0.98713 1.70040 1.44727 1.06381 1.28916 0.85724 0.78967 0.78892 0.79898 1.19930 1.20309 1.19235 1.19946 1.08801 0.92868 0.97753 0.92317 0.92251 0.92254 0.90541 0.92408 0.92551 0.92487 0.91566 0.91642 0.76854 0.88465 0.88302 0.87973 0.87502 0.85637 0.92134 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.11 -0.75 2.96 -90.62 -0.27 -1.02 16 3 C -0.15 -0.90 9.07 37.16 0.34 -0.57 16 4 C 0.12 1.24 5.06 -4.04 -0.02 1.22 16 5 N -0.74 -7.80 5.28 -60.29 -0.32 -8.11 16 6 C 0.51 7.64 7.82 -10.98 -0.09 7.56 16 7 O -0.52 -10.50 16.03 5.56 0.09 -10.41 16 8 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 9 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 10 C -0.20 -3.66 9.70 -39.53 -0.38 -4.04 16 11 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 12 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 13 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 14 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 15 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 16 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.87 -26.06 13.67 55.48 0.76 -25.30 16 19 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.32 7.18 -51.93 -0.37 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 2.89 7.65 -40.82 -0.31 2.58 16 34 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.11 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -35.03 339.57 -7.16 -42.20 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.88 Total: 3.98 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.91 Total: -18.19 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.44 Total: -33.42 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.03 -7.16 -42.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089600365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.049 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds