Wall clock time and date at job start Mon Mar 30 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 C 1.52996 * 109.47102 * 119.99850 * 2 1 3 5 5 N 1.46500 * 109.47128 * 174.99824 * 4 2 1 6 6 C 1.34774 * 120.00119 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47208 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97915 * 9 8 6 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99715 * 9 8 6 24 24 H 1.08996 * 109.47044 * 300.00047 * 1 2 3 25 25 H 1.09001 * 109.47212 * 59.99909 * 1 2 3 26 26 H 1.08997 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46695 * 240.00185 * 2 1 3 28 28 H 1.09003 * 109.47312 * 60.00563 * 3 2 1 29 29 H 1.09003 * 109.46804 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47278 * 300.00050 * 3 2 1 31 31 H 1.09008 * 109.46644 * 55.00149 * 4 2 1 32 32 H 1.08998 * 109.47635 * 295.00345 * 4 2 1 33 33 H 0.97001 * 119.99420 * 0.02562 * 5 4 2 34 34 H 1.09002 * 109.46571 * 59.99894 * 8 6 5 35 35 H 1.08992 * 109.46782 * 300.00158 * 8 6 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4291 2.1906 7 8 3.5699 -1.8849 3.1390 8 6 5.6750 -1.5368 2.1306 9 6 6.1773 -2.2484 3.3604 10 6 6.5060 -1.5239 4.4919 11 6 6.9676 -2.1731 5.6222 12 6 7.0957 -3.5483 5.6265 13 6 6.7720 -4.2780 4.4903 14 8 6.9026 -5.6292 4.4895 15 6 7.4648 -6.1905 5.5790 16 1 7.7131 -5.5793 6.4340 17 6 7.7240 -7.5524 5.6015 18 7 7.4219 -8.2968 4.5598 19 14 8.5035 -8.3299 7.1105 20 1 7.4381 -8.7691 8.0472 21 1 9.3157 -9.5032 6.6993 22 1 9.3763 -7.3355 7.7848 23 6 6.3092 -3.6228 3.3563 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1370 33 1 3.9824 -0.4621 0.4318 34 1 6.1093 -0.5381 2.0854 35 1 5.9637 -2.0991 1.2426 36 1 6.4018 -0.4489 4.4927 37 1 7.2238 -1.6047 6.5039 38 1 7.4515 -4.0553 6.5113 39 1 7.6036 -9.2495 4.5754 40 1 6.0531 -4.1878 2.4723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089600365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:56 Heat of formation + Delta-G solvation = -82.144360 kcal Electronic energy + Delta-G solvation = -20570.819541 eV Core-core repulsion = 17349.639152 eV Total energy + Delta-G solvation = -3221.180388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13895 -40.40873 -38.32824 -37.49024 -34.37417 -34.25819 -33.32345 -30.89598 -28.96878 -28.02642 -27.36595 -26.43214 -23.28699 -22.76159 -21.61014 -21.05814 -19.49163 -18.79678 -17.94462 -17.15287 -16.87370 -16.61440 -16.27809 -16.08059 -15.52693 -15.47467 -15.01975 -14.89278 -14.37200 -14.31457 -14.00467 -13.87957 -13.60438 -13.33807 -12.97426 -12.92720 -12.73297 -12.47170 -12.39509 -12.21970 -12.10241 -12.00569 -11.84299 -11.62916 -11.20444 -10.94756 -10.79307 -10.07147 -9.63260 -8.97537 -8.47068 -6.15712 0.52542 0.76211 1.33769 1.43754 1.51961 1.69416 2.17682 2.27028 2.85887 3.18799 3.44731 3.79215 3.82687 3.96154 4.10741 4.12284 4.18720 4.32390 4.44745 4.58918 4.60076 4.65660 4.68144 4.74235 4.81378 4.86107 5.01720 5.05183 5.08037 5.13155 5.23378 5.31068 5.36918 5.42868 5.54018 5.65499 5.73173 5.75853 6.02954 6.24146 6.60957 6.97421 7.33414 7.79232 8.76671 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031628 B = 0.003108 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.079338 B = 9005.843801 C = 9516.559476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.147 4.147 4 C 0.121 3.879 5 N -0.716 5.716 6 C 0.511 3.489 7 O -0.583 6.583 8 C -0.091 4.091 9 C -0.027 4.027 10 C -0.181 4.181 11 C -0.074 4.074 12 C -0.248 4.248 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.252 1.252 23 C -0.194 4.194 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.417 0.583 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.273 0.727 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 20.951 -9.728 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.003 4.003 5 N -0.370 5.370 6 C 0.298 3.702 7 O -0.462 6.462 8 C -0.130 4.130 9 C -0.027 4.027 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.189 1.189 21 H -0.193 1.193 22 H -0.176 1.176 23 C -0.213 4.213 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.255 0.745 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.472 20.268 -9.305 23.521 hybrid contribution 0.329 -0.924 0.438 1.075 sum -7.143 19.344 -8.866 22.446 Atomic orbital electron populations 1.21786 0.93772 1.02126 1.02766 1.21315 0.96941 0.97073 0.96467 1.21871 1.01542 0.94624 1.02421 1.21450 0.79783 0.99873 0.99185 1.45870 1.07801 1.59634 1.23682 1.20975 0.90601 0.76710 0.81866 1.90753 1.71309 1.48680 1.35453 1.20709 0.90611 1.04556 0.97132 1.19223 0.96171 0.91195 0.96130 1.20984 1.05523 1.00433 0.92969 1.21137 0.96525 0.92527 0.99004 1.21299 1.10826 0.95939 0.98630 1.19879 0.94753 0.84132 0.95074 1.83934 1.72005 1.16105 1.42156 1.21832 1.40453 0.92996 0.93793 0.88259 1.26623 0.97599 0.95439 1.02494 1.70189 1.47230 1.06877 1.31820 0.84569 0.78205 0.78011 0.75276 1.18940 1.19309 1.17572 1.20230 1.09387 0.94795 0.96883 0.92602 0.90740 0.92885 0.89482 0.93036 0.91823 0.91150 0.93602 0.92775 0.74470 0.83710 0.86022 0.83462 0.83669 0.86451 0.91837 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.10 -1.14 2.96 -10.79 -0.03 -1.17 16 3 C -0.15 -1.32 9.07 71.98 0.65 -0.67 16 4 C 0.12 2.29 5.06 86.38 0.44 2.73 16 5 N -0.72 -13.22 5.28 -463.06 -2.45 -15.67 16 6 C 0.51 14.15 7.82 87.66 0.69 14.83 16 7 O -0.58 -23.35 16.03 -3.04 -0.05 -23.40 16 8 C -0.09 -2.14 5.83 29.10 0.17 -1.97 16 9 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 10 C -0.18 -6.08 9.70 22.30 0.22 -5.87 16 11 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 12 C -0.25 -11.69 9.17 22.39 0.21 -11.48 16 13 C 0.11 6.00 6.65 22.58 0.15 6.15 16 14 O -0.23 -15.01 9.76 -22.74 -0.22 -15.24 16 15 C -0.41 -25.38 9.49 67.92 0.64 -24.74 16 16 H 0.10 5.61 5.21 -2.91 -0.02 5.59 16 17 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 18 N -0.92 -58.63 13.67 21.61 0.30 -58.33 16 19 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 23 C -0.19 -8.96 9.65 22.39 0.22 -8.74 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.48 7.18 -2.39 -0.02 0.46 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 4.41 7.65 -92.71 -0.71 3.70 16 34 H 0.15 2.11 8.09 -2.39 -0.02 2.09 16 35 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -83.87 339.57 4.54 -79.32 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.33 Total: 23.25 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 4.61 Total: -36.45 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.15 Total: -74.00 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.27 Total: -38.63 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -83.87 4.54 -79.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089600365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.821 kcal (2) G-P(sol) polarization free energy of solvation -83.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds