Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47129 * 2 1 4 4 C 1.52996 * 109.47130 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47128 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00119 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47208 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97915 * 9 8 6 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99715 * 9 8 6 24 24 H 1.09003 * 109.46975 * 59.99968 * 1 2 3 25 25 H 1.08996 * 109.46960 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47317 * 300.00252 * 1 2 3 27 27 H 1.08993 * 109.47356 * 240.00243 * 2 1 3 28 28 H 1.08998 * 109.47029 * 119.99566 * 2 1 3 29 29 H 1.09002 * 109.46549 * 59.99915 * 3 2 1 30 30 H 1.08998 * 109.47227 * 300.00354 * 3 2 1 31 31 H 1.09008 * 109.46644 * 60.00251 * 4 3 2 32 32 H 1.08998 * 109.47635 * 300.00447 * 4 3 2 33 33 H 0.97001 * 119.99420 * 0.02562 * 5 4 3 34 34 H 1.09002 * 109.46571 * 59.99894 * 8 6 5 35 35 H 1.08992 * 109.46782 * 300.00158 * 8 6 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3834 3.0701 -0.0001 7 8 6.1716 2.1483 -0.0001 8 6 5.8857 4.4909 -0.0001 9 6 7.3927 4.4910 -0.0009 10 6 8.0842 4.4912 1.1972 11 6 9.4670 4.4918 1.2006 12 6 10.1620 4.4855 0.0070 13 6 9.4708 4.4909 -1.1972 14 8 10.1511 4.4908 -2.3720 15 6 11.4926 4.6073 -2.3025 16 1 11.9850 4.6133 -1.3413 17 6 12.2398 4.7193 -3.4651 18 7 11.6400 4.7125 -4.6358 19 14 14.0983 4.8813 -3.3687 20 1 14.7150 3.5308 -3.3976 21 1 14.5868 5.6735 -4.5260 22 1 14.4705 5.5686 -2.1060 23 6 8.0818 4.4911 -1.1974 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 3.4279 3.5610 -0.0003 34 1 5.5224 5.0047 0.8899 35 1 5.5223 5.0047 -0.8900 36 1 7.5429 4.4910 2.1318 37 1 10.0040 4.4924 2.1376 38 1 11.2420 4.4807 0.0104 39 1 12.1627 4.7912 -5.4491 40 1 7.5413 4.4916 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089600926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = -85.148043 kcal Electronic energy + Delta-G solvation = -20296.853649 eV Core-core repulsion = 17075.543012 eV Total energy + Delta-G solvation = -3221.310638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12021 -40.37600 -38.26101 -37.07239 -34.65845 -34.33868 -33.42859 -30.94946 -30.11139 -28.18307 -27.21705 -24.42868 -23.25831 -22.65107 -22.25832 -21.20447 -19.50136 -18.79879 -17.93643 -17.01784 -16.93119 -16.71088 -16.42915 -16.08661 -15.74146 -15.50905 -14.98165 -14.76995 -14.51269 -14.36505 -14.18770 -13.98074 -13.58897 -13.25655 -12.97102 -12.82555 -12.47294 -12.43379 -12.40600 -12.21728 -12.10879 -12.06120 -11.97915 -11.50148 -11.20482 -10.93747 -10.79287 -10.08021 -9.63308 -8.97628 -8.47136 -6.15739 0.52478 0.76070 1.33708 1.43725 1.51939 1.68858 2.17609 2.26059 2.85680 3.18618 3.44663 3.81482 3.89306 4.02311 4.08992 4.11510 4.24991 4.32343 4.42302 4.47630 4.58737 4.65195 4.65898 4.71350 4.74189 4.93132 4.95424 5.05882 5.09797 5.13224 5.26677 5.31430 5.36609 5.45466 5.50904 5.65434 5.73099 5.75789 6.02881 6.24145 6.61448 6.97317 7.33447 7.79161 8.76573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.002910 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.558645 B = 9619.993254 C =10188.400466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.118 4.118 4 C 0.116 3.884 5 N -0.718 5.718 6 C 0.511 3.489 7 O -0.583 6.583 8 C -0.091 4.091 9 C -0.027 4.027 10 C -0.181 4.181 11 C -0.074 4.074 12 C -0.247 4.247 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.414 4.414 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.252 1.252 23 C -0.194 4.194 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.419 0.581 34 H 0.146 0.854 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.273 0.727 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.512 -1.959 12.904 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.008 4.008 5 N -0.372 5.372 6 C 0.298 3.702 7 O -0.462 6.462 8 C -0.130 4.130 9 C -0.027 4.027 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.189 1.189 21 H -0.193 1.193 22 H -0.176 1.176 23 C -0.213 4.213 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.257 0.743 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.010 -2.625 12.462 23.719 hybrid contribution 0.896 0.086 -0.588 1.075 sum -19.114 -2.538 11.874 22.645 Atomic orbital electron populations 1.21745 0.94568 1.02098 1.02309 1.21464 0.96839 0.95843 1.02226 1.21755 0.91491 0.98427 1.03936 1.21393 0.95667 0.82772 1.00980 1.45867 1.06319 1.09654 1.75339 1.20993 0.82526 0.91702 0.74984 1.90753 1.56834 1.48062 1.50581 1.20711 0.90723 0.93552 1.08004 1.19226 0.95108 0.96652 0.91737 1.20989 0.93884 1.07371 0.97678 1.21141 0.94829 0.96381 0.96862 1.21296 1.00472 1.12108 0.92780 1.19889 0.92861 0.94539 0.86630 1.83935 1.21381 1.81747 1.27114 1.21833 0.79120 1.52523 0.95568 0.88239 1.26633 1.06261 0.95925 0.93418 1.70190 1.38596 1.48932 0.98393 0.84564 0.73258 0.79112 0.79092 1.18940 1.19328 1.17558 1.20234 0.90734 1.11552 0.98799 0.92395 0.92464 0.92021 0.92372 0.91845 0.89679 0.90324 0.93692 0.92712 0.74328 0.83658 0.85996 0.83436 0.83656 0.86448 0.91843 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.13 -1.42 5.93 30.60 0.18 -1.24 16 3 C -0.12 -1.29 5.33 30.60 0.16 -1.12 16 4 C 0.12 2.14 5.67 86.38 0.49 2.63 16 5 N -0.72 -13.11 5.56 -463.06 -2.57 -15.68 16 6 C 0.51 14.12 7.82 87.66 0.69 14.80 16 7 O -0.58 -23.37 16.03 -3.04 -0.05 -23.42 16 8 C -0.09 -2.13 5.83 29.10 0.17 -1.96 16 9 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 10 C -0.18 -6.08 9.70 22.30 0.22 -5.87 16 11 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 12 C -0.25 -11.67 9.17 22.39 0.21 -11.46 16 13 C 0.11 5.96 6.65 22.58 0.15 6.11 16 14 O -0.23 -15.00 9.76 -22.74 -0.22 -15.22 16 15 C -0.41 -25.36 9.49 67.92 0.64 -24.71 16 16 H 0.10 5.61 5.21 -2.91 -0.02 5.60 16 17 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 18 N -0.92 -58.64 13.67 21.61 0.30 -58.35 16 19 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 C -0.19 -8.97 9.65 22.39 0.22 -8.75 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.42 4.16 8.47 -92.71 -0.79 3.38 16 34 H 0.15 2.10 8.09 -2.39 -0.02 2.08 16 35 H 0.12 2.38 8.08 -2.39 -0.02 2.36 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -84.17 342.19 4.17 -80.00 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.25 Total: 22.97 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 4.44 Total: -36.83 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.28 Total: -74.03 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.27 Total: -38.64 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -84.17 4.17 -80.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089600926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -84.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds