Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47457 * 2 1 4 4 C 1.53002 * 109.46896 * 240.00089 * 2 1 3 5 5 N 1.46500 * 109.47213 * 120.00269 * 2 1 3 6 6 C 1.34774 * 120.00119 * 59.99849 * 5 2 1 7 7 O 1.21282 * 120.00304 * 0.02562 * 6 5 2 8 8 C 1.50704 * 120.00135 * 180.02562 * 6 5 2 9 9 C 1.50699 * 109.47208 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97915 * 9 8 6 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99715 * 9 8 6 24 24 H 1.09004 * 109.47581 * 299.99949 * 1 2 3 25 25 H 1.09007 * 109.47499 * 59.99717 * 1 2 3 26 26 H 1.09002 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47635 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46996 * 300.00591 * 3 2 1 29 29 H 1.09002 * 109.47193 * 59.99594 * 3 2 1 30 30 H 1.09001 * 109.47118 * 299.99961 * 4 2 1 31 31 H 1.09000 * 109.47346 * 60.00558 * 4 2 1 32 32 H 1.09003 * 109.47032 * 180.02562 * 4 2 1 33 33 H 0.97001 * 119.99420 * 239.99895 * 5 2 1 34 34 H 1.09002 * 109.46571 * 59.99894 * 8 6 5 35 35 H 1.08992 * 109.46782 * 300.00158 * 8 6 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6927 -1.9810 1.4094 7 8 0.9958 -2.5706 0.6109 8 6 2.1946 -2.6913 2.6401 9 6 1.6928 -4.1123 2.6397 10 6 0.4840 -4.4183 3.2386 11 6 0.0205 -5.7211 3.2407 12 6 0.7607 -6.7200 2.6389 13 6 1.9771 -6.4170 2.0419 14 8 2.7097 -7.3976 1.4549 15 6 2.2606 -8.6616 1.5904 16 1 1.3143 -8.8493 2.0758 17 6 3.0138 -9.7205 1.1065 18 7 4.1667 -9.4918 0.5157 19 14 2.3919 -11.4718 1.2950 20 1 1.0797 -11.4591 1.9901 21 1 2.2348 -12.0884 -0.0468 22 1 3.3666 -12.2603 2.0910 23 6 2.4404 -5.1074 2.0420 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1299 -0.7217 -1.2491 33 1 2.5759 -0.2192 1.8346 34 1 1.8308 -2.1773 3.5299 35 1 3.2845 -2.6912 2.6405 36 1 -0.0989 -3.6381 3.7054 37 1 -0.9234 -5.9570 3.7094 38 1 0.3957 -7.7365 2.6364 39 1 4.6937 -10.2326 0.1775 40 1 3.3844 -4.8680 1.5753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089708762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = -49.834474 kcal Electronic energy + Delta-G solvation = -21149.563154 eV Core-core repulsion = 17929.783827 eV Total energy + Delta-G solvation = -3219.779327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11540 -38.84910 -36.88030 -36.01100 -32.62921 -32.19374 -31.32146 -29.10290 -27.54780 -27.28905 -26.91333 -25.17731 -21.96181 -21.45871 -20.30588 -19.54501 -17.60792 -17.08594 -16.78020 -15.84753 -15.34083 -14.91193 -14.46536 -14.35203 -14.06780 -13.88700 -13.67757 -13.40302 -13.32424 -12.73855 -12.53798 -12.33441 -12.23912 -12.14812 -11.87630 -11.64691 -11.45450 -11.23705 -11.15012 -11.10566 -10.76597 -10.70161 -10.54535 -10.38175 -9.40309 -9.26311 -9.02686 -8.77855 -7.98312 -7.14190 -6.38145 -3.96954 2.17483 2.46931 2.86921 3.15861 3.17819 3.23518 3.27485 4.02169 4.55539 4.67448 4.77715 4.93518 4.99776 5.16764 5.19653 5.31839 5.35539 5.47195 5.56977 5.64478 5.67631 5.69133 5.75569 5.83009 5.86773 5.90053 6.00836 6.24738 6.28183 6.35486 6.41566 6.62291 6.73811 6.99556 7.14717 7.34828 7.44360 7.51343 7.60866 7.90957 8.07334 8.44645 9.07885 9.79593 10.80354 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.003621 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.921090 B = 7729.919688 C = 8203.067992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 C -0.154 4.154 4 C -0.166 4.166 5 N -0.733 5.733 6 C 0.516 3.484 7 O -0.514 6.514 8 C -0.096 4.096 9 C -0.031 4.031 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.155 3.845 14 O -0.181 6.181 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.174 4.174 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.396 0.604 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.268 0.732 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 19.056 2.804 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.224 4.224 5 N -0.387 5.387 6 C 0.302 3.698 7 O -0.389 6.389 8 C -0.135 4.135 9 C -0.032 4.032 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.102 3.898 14 O -0.085 6.085 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.194 4.194 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.962 18.477 1.957 18.998 hybrid contribution -0.060 -0.607 0.398 0.729 sum -4.022 17.870 2.355 18.468 Atomic orbital electron populations 1.22226 0.94434 1.04238 1.01295 1.20275 0.94329 0.91499 0.85563 1.22079 1.01519 0.94761 1.02764 1.22242 1.00917 1.03144 0.96080 1.46220 1.54838 1.12370 1.25305 1.20688 0.80198 0.81158 0.87728 1.90691 1.36413 1.65589 1.46162 1.20611 1.02339 0.94164 0.96429 1.18657 0.94745 0.91828 0.97956 1.20341 0.97378 0.96130 1.07655 1.20671 0.98125 0.92777 0.97776 1.21168 0.97088 1.00230 1.06551 1.19276 0.90367 0.89508 0.90688 1.83976 1.46611 1.14648 1.63233 1.21365 1.05798 0.79467 1.39984 0.89098 1.25269 0.95369 0.99574 0.96366 1.70050 1.11702 1.32329 1.35944 0.85659 0.78762 0.80726 0.78338 1.19131 1.20205 1.20203 1.19942 1.01764 0.90668 1.06993 0.92946 0.92193 0.90081 0.92014 0.91057 0.92117 0.89982 0.92186 0.92769 0.76994 0.88570 0.88416 0.88013 0.87547 0.85668 0.92193 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.40 37.15 0.31 -1.48 16 2 C 0.17 1.72 1.06 -131.83 -0.14 1.58 16 3 C -0.15 -1.07 8.59 37.16 0.32 -0.75 16 4 C -0.17 -1.95 8.40 37.16 0.31 -1.63 16 5 N -0.73 -7.67 5.11 -47.61 -0.24 -7.91 16 6 C 0.52 7.42 7.24 -10.98 -0.08 7.34 16 7 O -0.51 -9.69 12.24 5.56 0.07 -9.62 16 8 C -0.10 -1.29 5.83 -29.03 -0.17 -1.46 16 9 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 10 C -0.20 -3.61 9.70 -39.53 -0.38 -3.99 16 11 C -0.08 -1.48 10.04 -39.61 -0.40 -1.87 16 12 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 13 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 14 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 15 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 16 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 19 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.17 -3.89 9.65 -39.39 -0.38 -4.27 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 2.89 8.47 -40.82 -0.35 2.54 16 34 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -34.14 333.02 -6.67 -40.81 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.76 Total: 5.81 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.49 Total: -19.57 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.52 Total: -33.13 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.07 Total: -14.98 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.14 -6.67 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089708762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.027 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds