Wall clock time and date at job start Mon Mar 30 2020 01:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47457 * 2 1 4 4 C 1.53002 * 109.46896 * 240.00089 * 2 1 3 5 5 N 1.46500 * 109.47213 * 120.00269 * 2 1 3 6 6 C 1.34774 * 120.00119 * 59.99849 * 5 2 1 7 7 O 1.21282 * 120.00304 * 0.02562 * 6 5 2 8 8 C 1.50704 * 120.00135 * 180.02562 * 6 5 2 9 9 C 1.50699 * 109.47208 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96230 * 269.97915 * 9 8 6 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99715 * 9 8 6 24 24 H 1.09004 * 109.47581 * 299.99949 * 1 2 3 25 25 H 1.09007 * 109.47499 * 59.99717 * 1 2 3 26 26 H 1.09002 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47635 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46996 * 300.00591 * 3 2 1 29 29 H 1.09002 * 109.47193 * 59.99594 * 3 2 1 30 30 H 1.09001 * 109.47118 * 299.99961 * 4 2 1 31 31 H 1.09000 * 109.47346 * 60.00558 * 4 2 1 32 32 H 1.09003 * 109.47032 * 180.02562 * 4 2 1 33 33 H 0.97001 * 119.99420 * 239.99895 * 5 2 1 34 34 H 1.09002 * 109.46571 * 59.99894 * 8 6 5 35 35 H 1.08992 * 109.46782 * 300.00158 * 8 6 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6927 -1.9810 1.4094 7 8 0.9958 -2.5706 0.6109 8 6 2.1946 -2.6913 2.6401 9 6 1.6928 -4.1123 2.6397 10 6 0.4840 -4.4183 3.2386 11 6 0.0205 -5.7211 3.2407 12 6 0.7607 -6.7200 2.6389 13 6 1.9771 -6.4170 2.0419 14 8 2.7097 -7.3976 1.4549 15 6 2.2606 -8.6616 1.5904 16 1 1.3143 -8.8493 2.0758 17 6 3.0138 -9.7205 1.1065 18 7 4.1667 -9.4918 0.5157 19 14 2.3919 -11.4718 1.2950 20 1 1.0797 -11.4591 1.9901 21 1 2.2348 -12.0884 -0.0468 22 1 3.3666 -12.2603 2.0910 23 6 2.4404 -5.1074 2.0420 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1299 -0.7217 -1.2491 33 1 2.5759 -0.2192 1.8346 34 1 1.8308 -2.1773 3.5299 35 1 3.2845 -2.6912 2.6405 36 1 -0.0989 -3.6381 3.7054 37 1 -0.9234 -5.9570 3.7094 38 1 0.3957 -7.7365 2.6364 39 1 4.6937 -10.2326 0.1775 40 1 3.3844 -4.8680 1.5753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089708762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:02 Heat of formation + Delta-G solvation = -73.266136 kcal Electronic energy + Delta-G solvation = -21150.579227 eV Core-core repulsion = 17929.783827 eV Total energy + Delta-G solvation = -3220.795400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28284 -40.54786 -38.41585 -37.27109 -34.35064 -33.78064 -32.56168 -30.84033 -28.35444 -28.21690 -28.18522 -27.22522 -23.41889 -23.06233 -21.71162 -20.50175 -19.48750 -18.78866 -18.01516 -16.83371 -16.78471 -16.55891 -16.09695 -15.85925 -15.52455 -15.13729 -14.96656 -14.78798 -14.53253 -14.31111 -13.99819 -13.62258 -13.24168 -13.17162 -12.99979 -12.96867 -12.75711 -12.47843 -12.44401 -12.34863 -12.21466 -12.08873 -12.04541 -11.93977 -11.20024 -10.82020 -10.55735 -10.00046 -9.61826 -8.97100 -8.47311 -6.15905 0.53480 0.76495 1.33617 1.42595 1.52578 1.77451 2.17360 2.29831 2.85879 3.18853 3.45294 3.79056 3.90124 4.02168 4.11310 4.13971 4.24993 4.32595 4.46392 4.59165 4.66528 4.71245 4.73114 4.74373 4.83681 4.87577 4.97960 5.02469 5.08848 5.13449 5.24159 5.31700 5.39102 5.42136 5.65784 5.71719 5.73588 5.76611 6.03018 6.24685 6.73711 6.97304 7.44207 7.79263 8.76583 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.003621 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.921090 B = 7729.919688 C = 8203.067992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 C -0.145 4.145 4 C -0.166 4.166 5 N -0.714 5.714 6 C 0.513 3.487 7 O -0.568 6.568 8 C -0.094 4.094 9 C -0.023 4.023 10 C -0.180 4.180 11 C -0.074 4.074 12 C -0.248 4.248 13 C 0.112 3.888 14 O -0.236 6.236 15 C -0.414 4.414 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.265 1.265 23 C -0.193 4.193 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.416 0.584 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 21.878 4.721 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 C -0.202 4.202 4 C -0.224 4.224 5 N -0.368 5.368 6 C 0.301 3.699 7 O -0.446 6.446 8 C -0.133 4.133 9 C -0.024 4.024 10 C -0.198 4.198 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.062 3.938 14 O -0.143 6.143 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.213 4.213 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.159 0.841 35 H 0.136 0.864 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.367 21.391 3.919 22.400 hybrid contribution 0.273 -1.147 -0.130 1.186 sum -5.094 20.244 3.789 21.216 Atomic orbital electron populations 1.22178 0.94940 1.02100 1.02662 1.20414 0.94023 0.93240 0.84409 1.22023 1.02080 0.91990 1.04155 1.22226 1.00999 1.01077 0.98066 1.46061 1.53945 1.11153 1.25634 1.20825 0.79626 0.82146 0.87344 1.90705 1.39045 1.66975 1.47864 1.20725 1.03685 0.90941 0.97938 1.19200 0.94159 0.93700 0.95307 1.20961 0.96860 0.96631 1.05384 1.21126 0.98969 0.92529 0.96560 1.21282 0.96909 1.01023 1.07474 1.19876 0.91623 0.89984 0.92309 1.83934 1.48699 1.15549 1.66087 1.21868 1.06533 0.80023 1.40611 0.88288 1.26618 0.95434 1.04492 0.95605 1.70195 1.13650 1.34059 1.38158 0.84509 0.78807 0.73948 0.78771 1.17546 1.19359 1.19025 1.20214 1.02395 0.90645 1.08007 0.91607 0.90837 0.93862 0.91096 0.90022 0.90432 0.94218 0.90642 0.92520 0.74686 0.84064 0.86420 0.83575 0.83767 0.86559 0.91854 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.40 71.98 0.60 -2.61 16 2 C 0.16 2.96 1.06 3.60 0.00 2.97 16 3 C -0.15 -1.45 8.59 71.98 0.62 -0.83 16 4 C -0.17 -3.80 8.40 71.98 0.60 -3.19 16 5 N -0.71 -12.87 5.11 -422.94 -2.16 -15.03 16 6 C 0.51 13.78 7.24 87.66 0.63 14.42 16 7 O -0.57 -21.44 12.24 -3.04 -0.04 -21.48 16 8 C -0.09 -2.21 5.83 29.10 0.17 -2.04 16 9 C -0.02 -0.82 4.37 -19.88 -0.09 -0.91 16 10 C -0.18 -6.04 9.70 22.30 0.22 -5.83 16 11 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 12 C -0.25 -11.69 9.17 22.39 0.21 -11.49 16 13 C 0.11 6.02 6.65 22.58 0.15 6.17 16 14 O -0.24 -15.07 9.76 -22.74 -0.22 -15.29 16 15 C -0.41 -25.39 9.49 67.92 0.64 -24.75 16 16 H 0.10 5.62 5.21 -2.91 -0.02 5.60 16 17 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 18 N -0.92 -58.56 13.67 21.61 0.30 -58.27 16 19 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 20 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 C -0.19 -8.93 9.65 22.39 0.22 -8.71 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.04 1.22 6.17 -2.39 -0.01 1.21 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 1.26 6.17 -2.39 -0.01 1.25 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.42 4.28 8.47 -92.71 -0.79 3.50 16 34 H 0.14 2.12 8.09 -2.39 -0.02 2.10 16 35 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -82.98 333.02 4.83 -78.14 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.26 Total: 25.65 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 4.67 Total: -40.32 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -1.86 Total: -73.30 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.26 Total: -36.77 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.98 4.83 -78.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089708762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.876 kcal (2) G-P(sol) polarization free energy of solvation -82.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds