Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47278 * 2 1 4 4 H 1.08999 * 109.47379 * 305.53723 * 3 2 1 5 5 C 1.53000 * 109.47178 * 65.53664 * 3 2 1 6 6 C 1.50705 * 109.47497 * 186.46314 * 5 3 2 7 7 O 1.21294 * 119.99680 * 356.00765 * 6 5 3 8 8 N 1.34774 * 120.00228 * 176.00740 * 6 5 3 9 9 C 1.37088 * 120.00045 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00188 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00654 * 180.02562 * 9 8 6 12 12 N 1.31418 * 119.99265 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00877 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47020 * 59.99992 * 13 11 9 15 15 H 1.48497 * 109.47200 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46974 * 299.99937 * 13 11 9 17 17 C 1.50703 * 109.47340 * 185.53620 * 3 2 1 18 18 C 1.38266 * 119.94123 * 299.72760 * 17 3 2 19 19 C 1.38148 * 120.05184 * 179.72743 * 18 17 3 20 20 C 1.38732 * 119.94541 * 0.54222 * 19 18 17 21 21 O 1.35899 * 120.05983 * 179.75026 * 20 19 18 22 22 C 1.42898 * 116.99652 * 359.97438 * 21 20 19 23 23 C 1.38740 * 119.88830 * 359.73279 * 20 19 18 24 24 C 1.38146 * 119.93909 * 359.97438 * 23 20 19 25 25 H 1.09003 * 109.47195 * 294.52678 * 1 2 3 26 26 H 1.09001 * 109.47415 * 54.52944 * 1 2 3 27 27 H 1.09000 * 109.47555 * 174.53243 * 1 2 3 28 28 H 1.09008 * 109.46923 * 240.00240 * 2 1 3 29 29 H 1.09003 * 109.47568 * 120.00281 * 2 1 3 30 30 H 1.08997 * 109.47259 * 66.46354 * 5 3 2 31 31 H 1.08997 * 109.46832 * 306.46303 * 5 3 2 32 32 H 0.96995 * 119.99917 * 0.02562 * 8 6 5 33 33 H 0.96999 * 120.00250 * 180.02562 * 12 11 9 34 34 H 1.07993 * 119.97510 * 0.02562 * 18 17 3 35 35 H 1.07996 * 120.02870 * 180.27508 * 19 18 17 36 36 H 1.09000 * 109.47515 * 59.99738 * 22 21 20 37 37 H 1.09004 * 109.46940 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46915 * 299.99840 * 22 21 20 39 39 H 1.07995 * 120.02806 * 179.97438 * 23 20 19 40 40 H 1.08002 * 119.96686 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 1.6468 2.1224 1.3130 6 6 2.0079 3.5842 1.2496 7 8 2.5936 4.0227 0.2822 8 7 1.6800 4.4041 2.2677 9 6 2.0089 5.7337 2.2102 10 1 2.5305 6.1243 1.3488 11 6 1.6714 6.5791 3.2600 12 7 1.0372 6.1038 4.3084 13 14 2.1190 8.3909 3.1815 14 1 1.4688 9.0105 1.9988 15 1 1.6506 9.0705 4.4159 16 1 3.5928 8.5322 3.0669 17 6 3.5407 1.4446 -0.1371 18 6 4.3217 0.8184 0.8166 19 6 5.6974 0.8142 0.6903 20 6 6.2957 1.4487 -0.3887 21 8 7.6490 1.4503 -0.5126 22 6 8.3944 0.7797 0.5056 23 6 5.5100 2.0813 -1.3413 24 6 4.1345 2.0774 -1.2135 25 1 -0.3634 0.4266 0.9350 26 1 -0.3634 0.5963 -0.8369 27 1 -0.3634 -1.0230 -0.0979 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.1795 1.6521 2.1395 31 1 0.5728 2.0199 1.4678 32 1 1.2119 4.0533 3.0414 33 1 0.8012 6.6939 5.0412 34 1 3.8558 0.3280 1.6584 35 1 6.3069 0.3211 1.4331 36 1 8.1044 -0.2706 0.5362 37 1 9.4595 0.8567 0.2865 38 1 8.1881 1.2418 1.4710 39 1 5.9734 2.5762 -2.1819 40 1 3.5224 2.5693 -1.9550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -68.658570 kcal Electronic energy + Delta-G solvation = -21486.024182 eV Core-core repulsion = 18265.428581 eV Total energy + Delta-G solvation = -3220.595601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.99256 -38.64052 -37.24988 -35.10062 -33.77958 -31.16323 -30.76941 -30.37342 -28.72590 -27.17750 -25.24483 -23.96912 -22.61495 -21.47805 -20.00752 -18.82976 -17.94599 -17.75522 -16.15774 -15.91243 -15.59121 -15.24165 -14.65681 -14.34151 -14.18522 -13.82210 -13.62246 -13.43334 -13.14760 -13.06039 -12.56299 -12.22079 -12.10720 -11.88796 -11.67103 -11.52521 -11.28207 -11.02621 -10.95942 -10.73721 -10.48518 -10.40123 -10.30401 -10.17646 -10.10507 -9.42961 -8.60387 -8.27576 -7.89742 -7.65036 -6.35682 -3.75740 1.75028 1.82009 3.23435 3.28327 3.33215 3.44770 4.00941 4.14989 4.22397 4.87140 4.99561 5.01091 5.14609 5.16322 5.21369 5.26144 5.32996 5.43358 5.44551 5.61880 5.68585 5.77393 5.83116 5.86734 5.98304 6.03496 6.09655 6.18848 6.23766 6.31528 6.40651 6.57995 6.63152 6.63519 6.75440 7.11953 7.16230 7.60578 7.64909 8.12693 8.68736 9.24694 9.63131 10.15154 10.82300 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.005330 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.211850 B = 5252.430008 C = 6656.180020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.026 4.026 4 H 0.083 0.917 5 C -0.127 4.127 6 C 0.442 3.558 7 O -0.586 6.586 8 N -0.567 5.567 9 C -0.297 4.297 10 H 0.101 0.899 11 C 0.021 3.979 12 N -0.904 5.904 13 Si 0.928 3.072 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.082 4.082 18 C -0.082 4.082 19 C -0.211 4.211 20 C 0.112 3.888 21 O -0.323 6.323 22 C 0.030 3.970 23 C -0.153 4.153 24 C -0.043 4.043 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.391 0.609 33 H 0.271 0.729 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -13.962 -5.468 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.101 0.899 5 C -0.168 4.168 6 C 0.228 3.772 7 O -0.471 6.471 8 N -0.203 5.203 9 C -0.426 4.426 10 H 0.119 0.881 11 C -0.180 4.180 12 N -0.546 5.546 13 Si 0.755 3.245 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.082 4.082 18 C -0.100 4.100 19 C -0.229 4.229 20 C 0.067 3.933 21 O -0.237 6.237 22 C -0.065 4.065 23 C -0.172 4.172 24 C -0.061 4.061 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.224 0.776 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.662 -13.473 -6.082 15.829 hybrid contribution -0.030 0.729 1.005 1.242 sum 5.632 -12.744 -5.077 14.829 Atomic orbital electron populations 1.21841 0.95889 1.01131 1.02300 1.21601 0.95683 0.96140 1.01873 1.19881 0.91273 0.94927 0.98417 0.89866 1.21668 1.01913 0.95238 0.97936 1.19946 0.84844 0.87499 0.84876 1.90510 1.45633 1.77180 1.33731 1.41898 1.51678 1.08567 1.18194 1.19642 1.34694 0.83560 1.04739 0.88121 1.25228 0.97112 1.00418 0.95236 1.69607 1.40499 1.36677 1.07828 0.85960 0.78953 0.82137 0.77418 1.19967 1.21022 1.20007 1.19577 0.95238 0.98389 0.95021 1.20694 0.92617 0.98591 0.98132 1.21045 0.95973 1.06434 0.99488 1.18955 0.81973 0.97125 0.95232 1.86027 1.15933 1.73227 1.48514 1.22968 0.95936 0.96452 0.91193 1.20354 0.93151 1.03692 0.99988 1.20777 0.93016 0.94981 0.97345 0.92307 0.92606 0.93118 0.91992 0.92046 0.90629 0.90180 0.77588 0.91959 0.86388 0.86204 0.93008 0.88734 0.92792 0.85870 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.55 37.15 0.35 -1.34 16 2 C -0.12 -1.39 5.13 -26.74 -0.14 -1.53 16 3 C -0.03 -0.41 1.68 -91.77 -0.15 -0.56 16 4 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 5 C -0.13 -2.21 4.97 -27.88 -0.14 -2.34 16 6 C 0.44 10.38 7.57 -10.98 -0.08 10.29 16 7 O -0.59 -15.37 13.73 5.55 0.08 -15.29 16 8 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 9 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 10 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 12 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 13 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.08 -1.37 3.75 -104.60 -0.39 -1.76 16 18 C -0.08 -1.28 8.68 -39.60 -0.34 -1.62 16 19 C -0.21 -3.18 9.04 -39.43 -0.36 -3.54 16 20 C 0.11 1.80 6.69 -39.21 -0.26 1.54 16 21 O -0.32 -4.77 10.50 -19.42 -0.20 -4.98 16 22 C 0.03 0.31 9.81 101.05 0.99 1.30 16 23 C -0.15 -2.55 9.99 -39.43 -0.39 -2.95 16 24 C -0.04 -0.74 8.61 -39.61 -0.34 -1.08 16 25 H 0.06 0.65 6.71 -51.93 -0.35 0.30 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 30 H 0.08 1.22 7.16 -51.93 -0.37 0.85 16 31 H 0.08 1.25 6.42 -51.93 -0.33 0.92 16 32 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.12 1.60 7.13 -52.49 -0.37 1.22 16 35 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 36 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.13 2.11 7.94 -52.49 -0.42 1.69 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -31.89 330.38 -6.72 -38.60 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.71 Total: 10.81 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.50 Total: -11.66 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.67 Total: -38.95 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.13 Total: -20.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.89 -6.72 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.056 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds