Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47278 * 2 1 4 4 H 1.08999 * 109.47379 * 305.53723 * 3 2 1 5 5 C 1.53000 * 109.47178 * 65.53664 * 3 2 1 6 6 C 1.50705 * 109.47497 * 186.46314 * 5 3 2 7 7 O 1.21294 * 119.99680 * 356.00765 * 6 5 3 8 8 N 1.34774 * 120.00228 * 176.00740 * 6 5 3 9 9 C 1.37088 * 120.00045 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00188 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00654 * 180.02562 * 9 8 6 12 12 N 1.31418 * 119.99265 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00877 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47020 * 59.99992 * 13 11 9 15 15 H 1.48497 * 109.47200 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46974 * 299.99937 * 13 11 9 17 17 C 1.50703 * 109.47340 * 185.53620 * 3 2 1 18 18 C 1.38266 * 119.94123 * 299.72760 * 17 3 2 19 19 C 1.38148 * 120.05184 * 179.72743 * 18 17 3 20 20 C 1.38732 * 119.94541 * 0.54222 * 19 18 17 21 21 O 1.35899 * 120.05983 * 179.75026 * 20 19 18 22 22 C 1.42898 * 116.99652 * 359.97438 * 21 20 19 23 23 C 1.38740 * 119.88830 * 359.73279 * 20 19 18 24 24 C 1.38146 * 119.93909 * 359.97438 * 23 20 19 25 25 H 1.09003 * 109.47195 * 294.52678 * 1 2 3 26 26 H 1.09001 * 109.47415 * 54.52944 * 1 2 3 27 27 H 1.09000 * 109.47555 * 174.53243 * 1 2 3 28 28 H 1.09008 * 109.46923 * 240.00240 * 2 1 3 29 29 H 1.09003 * 109.47568 * 120.00281 * 2 1 3 30 30 H 1.08997 * 109.47259 * 66.46354 * 5 3 2 31 31 H 1.08997 * 109.46832 * 306.46303 * 5 3 2 32 32 H 0.96995 * 119.99917 * 0.02562 * 8 6 5 33 33 H 0.96999 * 120.00250 * 180.02562 * 12 11 9 34 34 H 1.07993 * 119.97510 * 0.02562 * 18 17 3 35 35 H 1.07996 * 120.02870 * 180.27508 * 19 18 17 36 36 H 1.09000 * 109.47515 * 59.99738 * 22 21 20 37 37 H 1.09004 * 109.46940 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46915 * 299.99840 * 22 21 20 39 39 H 1.07995 * 120.02806 * 179.97438 * 23 20 19 40 40 H 1.08002 * 119.96686 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 1.6468 2.1224 1.3130 6 6 2.0079 3.5842 1.2496 7 8 2.5936 4.0227 0.2822 8 7 1.6800 4.4041 2.2677 9 6 2.0089 5.7337 2.2102 10 1 2.5305 6.1243 1.3488 11 6 1.6714 6.5791 3.2600 12 7 1.0372 6.1038 4.3084 13 14 2.1190 8.3909 3.1815 14 1 1.4688 9.0105 1.9988 15 1 1.6506 9.0705 4.4159 16 1 3.5928 8.5322 3.0669 17 6 3.5407 1.4446 -0.1371 18 6 4.3217 0.8184 0.8166 19 6 5.6974 0.8142 0.6903 20 6 6.2957 1.4487 -0.3887 21 8 7.6490 1.4503 -0.5126 22 6 8.3944 0.7797 0.5056 23 6 5.5100 2.0813 -1.3413 24 6 4.1345 2.0774 -1.2135 25 1 -0.3634 0.4266 0.9350 26 1 -0.3634 0.5963 -0.8369 27 1 -0.3634 -1.0230 -0.0979 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.1795 1.6521 2.1395 31 1 0.5728 2.0199 1.4678 32 1 1.2119 4.0533 3.0414 33 1 0.8012 6.6939 5.0412 34 1 3.8558 0.3280 1.6584 35 1 6.3069 0.3211 1.4331 36 1 8.1044 -0.2706 0.5362 37 1 9.4595 0.8567 0.2865 38 1 8.1881 1.2418 1.4710 39 1 5.9734 2.5762 -2.1819 40 1 3.5224 2.5693 -1.9550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095433614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -88.104574 kcal Electronic energy + Delta-G solvation = -21486.867424 eV Core-core repulsion = 18265.428581 eV Total energy + Delta-G solvation = -3221.438843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20845 -40.19271 -38.67805 -36.36325 -35.73026 -33.20586 -31.95747 -31.47996 -30.08752 -28.20555 -26.88777 -25.44019 -23.78349 -22.59836 -21.51782 -20.43135 -19.74631 -19.05965 -17.69796 -17.28239 -16.67715 -16.59026 -16.35176 -15.89965 -15.59239 -15.19770 -15.16333 -14.58450 -14.41814 -14.31837 -13.84200 -13.58368 -13.45409 -13.23664 -13.06298 -12.89761 -12.71432 -12.45135 -12.39295 -12.14533 -12.03481 -11.80377 -11.56844 -11.48704 -11.44828 -11.26060 -10.21256 -9.95327 -9.81113 -8.88645 -8.43369 -5.90786 0.51065 0.58530 1.39018 1.39926 1.50706 2.15293 2.31029 2.43667 2.90132 3.24935 3.30700 3.83965 3.89300 4.02672 4.13029 4.22682 4.36436 4.39820 4.44172 4.52270 4.59297 4.63440 4.67145 4.72191 4.75612 4.81048 4.90416 5.06127 5.13118 5.21365 5.27156 5.39512 5.41033 5.44727 5.49378 5.58883 5.89239 5.95301 6.04878 6.52757 6.65141 7.17678 7.64022 8.20492 8.74148 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.005330 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.211850 B = 5252.430008 C = 6656.180020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.021 4.021 4 H 0.062 0.938 5 C -0.116 4.116 6 C 0.439 3.561 7 O -0.617 6.617 8 N -0.580 5.580 9 C -0.329 4.329 10 H 0.075 0.925 11 C -0.014 4.014 12 N -0.923 5.923 13 Si 0.988 3.012 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.275 1.275 17 C -0.097 4.097 18 C -0.088 4.088 19 C -0.212 4.212 20 C 0.102 3.898 21 O -0.340 6.340 22 C 0.020 3.980 23 C -0.173 4.173 24 C -0.065 4.065 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.394 0.606 33 H 0.276 0.724 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.127 0.873 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 -15.350 -4.310 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.040 4.040 4 H 0.081 0.919 5 C -0.156 4.156 6 C 0.227 3.773 7 O -0.503 6.503 8 N -0.218 5.218 9 C -0.459 4.459 10 H 0.094 0.906 11 C -0.213 4.213 12 N -0.564 5.564 13 Si 0.812 3.188 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.201 1.201 17 C -0.098 4.098 18 C -0.106 4.106 19 C -0.230 4.230 20 C 0.058 3.942 21 O -0.254 6.254 22 C -0.075 4.075 23 C -0.191 4.191 24 C -0.083 4.083 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.228 0.772 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.877 -14.884 -4.919 16.741 hybrid contribution -0.020 1.114 0.605 1.268 sum 5.858 -13.770 -4.314 15.573 Atomic orbital electron populations 1.21849 0.94982 1.02334 1.01995 1.21537 0.96349 0.93444 1.02989 1.19865 0.90752 0.96906 0.96507 0.91925 1.21673 1.03520 0.90643 0.99731 1.21064 0.83037 0.89717 0.83475 1.90497 1.46553 1.78492 1.34754 1.41991 1.52573 1.08144 1.19061 1.19585 1.36191 0.85361 1.04745 0.90650 1.25959 0.96627 1.04139 0.94592 1.69668 1.40607 1.38033 1.08110 0.85068 0.78487 0.77356 0.77901 1.19769 1.19418 1.20062 1.19789 0.96006 0.98727 0.95245 1.21009 0.92908 0.98266 0.98380 1.21389 0.96240 1.05828 0.99545 1.19105 0.82805 0.97010 0.95321 1.86006 1.15312 1.73879 1.50229 1.23305 0.96793 0.97051 0.90314 1.20523 0.93307 1.04458 1.00835 1.20855 0.93437 0.95928 0.98075 0.92338 0.93308 0.91096 0.91341 0.90438 0.88620 0.87978 0.77220 0.91471 0.83965 0.83421 0.91314 0.86238 0.92602 0.85515 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.55 71.98 0.69 -2.31 16 2 C -0.11 -2.29 5.13 30.59 0.16 -2.13 16 3 C -0.02 -0.64 1.68 -11.54 -0.02 -0.66 16 4 H 0.06 2.13 7.70 -2.39 -0.02 2.11 16 5 C -0.12 -3.86 4.97 29.85 0.15 -3.71 16 6 C 0.44 20.77 7.57 87.66 0.66 21.43 16 7 O -0.62 -33.32 13.73 -3.07 -0.04 -33.36 16 8 N -0.58 -30.21 5.29 -306.98 -1.62 -31.83 16 9 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 10 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 11 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 12 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 13 Si 0.99 44.02 29.55 68.60 2.03 46.04 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 C -0.10 -3.21 3.75 -19.85 -0.07 -3.28 16 18 C -0.09 -2.57 8.68 22.26 0.19 -2.38 16 19 C -0.21 -6.02 9.04 22.37 0.20 -5.82 16 20 C 0.10 3.26 6.69 22.51 0.15 3.41 16 21 O -0.34 -9.73 10.50 -92.41 -0.97 -10.70 16 22 C 0.02 0.36 9.81 113.37 1.11 1.47 16 23 C -0.17 -5.92 9.99 22.37 0.22 -5.70 16 24 C -0.06 -2.31 8.61 22.25 0.19 -2.12 16 25 H 0.06 1.14 6.71 -2.39 -0.02 1.12 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.08 1.46 7.60 -2.39 -0.02 1.44 16 30 H 0.10 2.85 7.16 -2.39 -0.02 2.83 16 31 H 0.10 2.98 6.42 -2.39 -0.02 2.97 16 32 H 0.39 19.59 7.90 -92.71 -0.73 18.86 16 33 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.14 3.38 7.13 -2.91 -0.02 3.36 16 35 H 0.15 3.26 6.30 -2.91 -0.02 3.24 16 36 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 37 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 39 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.12 4.18 7.94 -2.91 -0.02 4.16 16 Total: -1.00 -69.62 330.38 4.90 -64.72 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: 0.31 Total: 35.85 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.92 Total: -20.31 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.34 Total: -82.24 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.01 Total: -44.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.62 4.90 -64.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.389 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds