Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08994 * 109.47465 * 305.00017 * 3 2 1 5 5 C 1.53003 * 109.47015 * 184.99741 * 3 2 1 6 6 C 1.50706 * 109.46765 * 65.00203 * 5 3 2 7 7 O 1.21287 * 120.00294 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99592 * 180.02562 * 6 5 3 9 9 C 1.37104 * 119.99703 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00118 * 359.97438 * 9 8 6 11 11 C 1.38950 * 120.00082 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99812 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47237 * 90.00327 * 13 11 9 15 15 H 1.48503 * 109.47492 * 210.00281 * 13 11 9 16 16 H 1.48503 * 109.47196 * 330.00335 * 13 11 9 17 17 C 1.50704 * 109.47295 * 65.00435 * 3 2 1 18 18 C 1.38264 * 119.94445 * 59.71981 * 17 3 2 19 19 C 1.38143 * 120.05448 * 179.73084 * 18 17 3 20 20 C 1.38737 * 119.94125 * 0.54746 * 19 18 17 21 21 O 1.35896 * 120.05251 * 179.75275 * 20 19 18 22 22 C 1.42900 * 117.00480 * 359.97150 * 21 20 19 23 23 C 1.38731 * 119.89094 * 359.72411 * 20 19 18 24 24 C 1.38147 * 119.94396 * 0.02562 * 23 20 19 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 30 30 H 1.08997 * 109.47571 * 184.99825 * 5 3 2 31 31 H 1.09000 * 109.47046 * 305.00930 * 5 3 2 32 32 H 0.96991 * 120.00379 * 359.97438 * 8 6 5 33 33 H 0.96999 * 120.00055 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.97320 * 0.02562 * 18 17 3 35 35 H 1.08003 * 120.03173 * 180.27301 * 19 18 17 36 36 H 1.08998 * 109.47060 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.47230 * 300.00912 * 22 21 20 38 38 H 1.09007 * 109.46952 * 60.00313 * 22 21 20 39 39 H 1.08000 * 120.02863 * 179.97438 * 23 20 19 40 40 H 1.07992 * 119.97565 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1257 6 6 3.9589 0.8823 -1.4672 7 8 3.1043 0.5166 -2.2463 8 7 5.2611 0.7859 -1.8012 9 6 5.6197 0.2750 -3.0219 10 1 4.8587 -0.0507 -3.7157 11 6 6.9621 0.1761 -3.3666 12 7 7.8880 0.5719 -2.5222 13 14 7.4506 -0.5207 -5.0294 14 1 7.5330 0.5802 -6.0226 15 1 8.7733 -1.1867 -4.9179 16 1 6.4341 -1.5096 -5.4698 17 6 1.6413 2.1163 1.2878 18 6 2.0728 1.6037 2.4972 19 6 1.7134 2.2227 3.6787 20 6 0.9093 3.3530 3.6516 21 8 0.5502 3.9608 4.8128 22 6 1.0361 3.3817 6.0255 23 6 0.4730 3.8620 2.4370 24 6 0.8395 3.2424 1.2580 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.9355 2.4656 -0.0366 31 1 3.9954 0.8312 0.6659 32 1 5.9445 1.0787 -1.1784 33 1 8.8252 0.5025 -2.7626 34 1 2.6953 0.7214 2.5180 35 1 2.0543 1.8245 4.6230 36 1 0.6771 3.9628 6.8749 37 1 0.6762 2.3562 6.1081 38 1 2.1261 3.3847 6.0183 39 1 -0.1533 4.7415 2.4133 40 1 0.5005 3.6384 0.3122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095433615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -89.221696 kcal Electronic energy + Delta-G solvation = -21056.398036 eV Core-core repulsion = 17834.910751 eV Total energy + Delta-G solvation = -3221.487285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23847 -40.29594 -38.82508 -36.35015 -35.52139 -33.28343 -31.98994 -31.57015 -30.32907 -28.13220 -27.00610 -24.99133 -23.93034 -22.92056 -21.41636 -20.53448 -19.75292 -19.06461 -17.92482 -17.10721 -16.59051 -16.52302 -16.08009 -15.92091 -15.80075 -15.47215 -15.05512 -14.79719 -14.49146 -14.14133 -14.03897 -13.70889 -13.51731 -13.37671 -12.93834 -12.78955 -12.73317 -12.40974 -12.26224 -12.13348 -12.08166 -11.93155 -11.68148 -11.54328 -11.35143 -11.31741 -10.20455 -9.97102 -9.89329 -8.97359 -8.45156 -5.93654 0.44996 0.50170 1.38156 1.41589 1.54351 2.08902 2.30731 2.43681 2.83026 3.22480 3.26191 3.80635 3.95754 3.99969 4.08130 4.22944 4.37028 4.40985 4.43143 4.49410 4.50828 4.59151 4.65035 4.70690 4.76061 4.79345 4.94156 5.01219 5.12275 5.18842 5.26667 5.34608 5.42102 5.43152 5.46363 5.63287 5.82567 5.87618 6.02785 6.50666 6.61535 7.14331 7.59376 8.14653 8.72377 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003460 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.358521 B = 8091.208729 C = 8623.595577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.015 4.015 4 H 0.065 0.935 5 C -0.113 4.113 6 C 0.441 3.559 7 O -0.623 6.623 8 N -0.577 5.577 9 C -0.333 4.333 10 H 0.080 0.920 11 C -0.015 4.015 12 N -0.922 5.922 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.272 1.272 17 C -0.107 4.107 18 C -0.080 4.080 19 C -0.204 4.204 20 C 0.108 3.892 21 O -0.336 6.336 22 C 0.019 3.981 23 C -0.159 4.159 24 C -0.082 4.082 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.395 0.605 33 H 0.277 0.723 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.139 0.861 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 4.519 16.445 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.034 4.034 4 H 0.083 0.917 5 C -0.153 4.153 6 C 0.230 3.770 7 O -0.510 6.510 8 N -0.213 5.213 9 C -0.462 4.462 10 H 0.098 0.902 11 C -0.214 4.214 12 N -0.563 5.563 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.107 4.107 18 C -0.098 4.098 19 C -0.223 4.223 20 C 0.063 3.937 21 O -0.250 6.250 22 C -0.076 4.076 23 C -0.177 4.177 24 C -0.100 4.100 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.156 0.844 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.803 4.442 15.962 20.343 hybrid contribution 1.013 -0.336 -0.569 1.209 sum -10.790 4.106 15.394 19.242 Atomic orbital electron populations 1.21643 0.95006 1.01455 1.01358 1.21632 0.96708 0.95476 1.01752 1.19684 0.92867 0.96537 0.94303 0.91681 1.21554 0.97406 1.02383 0.93984 1.20921 0.82294 0.83344 0.90484 1.90459 1.50305 1.55439 1.54810 1.42024 1.06436 1.56172 1.16676 1.19689 0.92454 1.39581 0.94491 0.90222 1.26035 0.94928 0.97539 1.02899 1.69678 1.01417 1.47838 1.37389 0.84947 0.77703 0.78412 0.77402 1.19712 1.19591 1.19709 1.19725 0.99880 0.96760 0.94372 1.20959 0.98309 0.99337 0.91145 1.21406 1.03178 0.97718 0.99993 1.19180 0.95325 0.92662 0.86494 1.86029 1.71438 1.53950 1.13627 1.23315 1.00197 1.00144 0.83913 1.20562 1.04669 1.02786 0.89685 1.21031 0.96486 0.94472 0.98058 0.92526 0.92252 0.93641 0.91745 0.92771 0.89107 0.88501 0.77129 0.91376 0.84944 0.83511 0.86366 0.91817 0.91969 0.84352 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.73 71.98 0.70 -3.04 16 2 C -0.12 -3.76 5.08 30.60 0.16 -3.60 16 3 C -0.01 -0.47 1.68 -11.54 -0.02 -0.49 16 4 H 0.06 2.27 7.68 -2.39 -0.02 2.25 16 5 C -0.11 -3.92 4.92 29.85 0.15 -3.78 16 6 C 0.44 20.89 7.46 87.66 0.65 21.54 16 7 O -0.62 -33.57 13.57 -3.05 -0.04 -33.61 16 8 N -0.58 -29.90 5.29 -306.98 -1.62 -31.52 16 9 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 10 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 11 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 12 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 13 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 C -0.11 -2.79 3.76 -19.85 -0.07 -2.86 16 18 C -0.08 -1.85 8.70 22.25 0.19 -1.66 16 19 C -0.20 -4.26 9.04 22.37 0.20 -4.06 16 20 C 0.11 2.44 6.69 22.51 0.15 2.59 16 21 O -0.34 -6.88 10.50 -92.38 -0.97 -7.85 16 22 C 0.02 0.22 9.81 113.37 1.11 1.34 16 23 C -0.16 -3.62 9.99 22.37 0.22 -3.40 16 24 C -0.08 -2.00 9.66 22.26 0.22 -1.79 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.47 7.38 -2.39 -0.02 1.45 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.82 7.20 -2.39 -0.02 1.81 16 29 H 0.05 2.17 5.88 -2.39 -0.01 2.15 16 30 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.10 2.97 7.58 -2.39 -0.02 2.95 16 32 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 33 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.13 2.82 7.12 -2.91 -0.02 2.80 16 35 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 36 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 38 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.13 2.99 7.94 -2.91 -0.02 2.96 16 Total: -1.00 -66.74 331.38 4.93 -61.81 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.31 Total: 33.64 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.94 Total: -17.72 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -1.34 Total: -81.57 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.01 Total: -41.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -66.74 4.93 -61.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.407 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds