Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.53003 * 109.46740 * 119.99953 * 2 1 3 5 5 O 1.42899 * 109.47433 * 64.99998 * 4 2 1 6 6 C 1.35893 * 117.00392 * 179.97438 * 5 4 2 7 7 C 1.38736 * 120.05957 * 180.02562 * 6 5 4 8 8 C 1.38138 * 119.94337 * 180.30421 * 7 6 5 9 9 C 1.38271 * 120.05803 * 359.41293 * 8 7 6 10 10 C 1.50698 * 119.94467 * 180.30180 * 9 8 7 11 11 C 1.50697 * 109.47395 * 270.30647 * 10 9 8 12 12 O 1.21290 * 120.00246 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00183 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00206 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99923 * 0.02562 * 14 13 11 16 16 C 1.38943 * 120.00030 * 180.02562 * 14 13 11 17 17 N 1.31419 * 119.99886 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00313 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47311 * 89.99876 * 18 16 14 20 20 H 1.48497 * 109.47616 * 210.00286 * 18 16 14 21 21 H 1.48506 * 109.46735 * 329.99981 * 18 16 14 22 22 C 1.38259 * 120.10889 * 0.60974 * 9 8 7 23 23 C 1.38146 * 120.05909 * 359.67363 * 22 9 8 24 24 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47302 * 300.00419 * 1 2 3 26 26 H 1.09005 * 109.46518 * 60.00254 * 1 2 3 27 27 H 1.09001 * 109.47302 * 239.99581 * 2 1 3 28 28 H 1.08994 * 109.47095 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47255 * 299.99906 * 3 2 1 30 30 H 1.09001 * 109.46898 * 59.99892 * 3 2 1 31 31 H 1.09002 * 109.47184 * 305.00251 * 4 2 1 32 32 H 1.09001 * 109.46987 * 184.99958 * 4 2 1 33 33 H 1.08002 * 120.02291 * 0.02562 * 7 6 5 34 34 H 1.08004 * 119.96766 * 179.69880 * 8 7 6 35 35 H 1.09000 * 109.47353 * 30.30435 * 10 9 8 36 36 H 1.09002 * 109.47057 * 150.30403 * 10 9 8 37 37 H 0.96997 * 119.99318 * 359.97438 * 13 11 10 38 38 H 0.96996 * 119.99725 * 179.97438 * 17 16 14 39 39 H 1.08006 * 119.97147 * 179.69573 * 22 9 8 40 40 H 1.07993 * 120.03340 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.6619 -2.0982 1.1921 6 6 2.0404 -2.8857 2.2329 7 6 1.7074 -4.2324 2.2423 8 6 2.0880 -5.0294 3.3045 9 6 2.8106 -4.4886 4.3520 10 6 3.2303 -5.3619 5.5063 11 6 2.1559 -5.3486 6.5629 12 8 1.1486 -4.6940 6.3955 13 7 2.3147 -6.0633 7.6945 14 6 1.3375 -6.0508 8.6560 15 1 0.4402 -5.4685 8.5065 16 6 1.5014 -6.7872 9.8228 17 7 0.5649 -6.7747 10.7447 18 14 3.0536 -7.7937 10.0818 19 1 4.0776 -6.9588 10.7595 20 1 2.7421 -8.9761 10.9245 21 1 3.5750 -8.2464 8.7671 22 6 3.1433 -3.1467 4.3453 23 6 2.7601 -2.3441 3.2882 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6052 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 1.1473 -4.6564 1.4220 34 1 1.8247 -6.0768 3.3145 35 1 3.3806 -6.3824 5.1539 36 1 4.1606 -4.9828 5.9292 37 1 3.1204 -6.5865 7.8285 38 1 0.6792 -7.2891 11.5591 39 1 3.7036 -2.7256 5.1670 40 1 3.0205 -1.2961 3.2832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098128258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -65.932578 kcal Electronic energy + Delta-G solvation = -20515.553022 eV Core-core repulsion = 17295.075630 eV Total energy + Delta-G solvation = -3220.477393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11818 -38.64200 -37.41296 -35.43622 -33.95794 -31.85237 -31.41695 -30.81807 -27.60064 -27.43383 -26.33385 -24.27539 -22.63812 -21.27498 -20.35491 -19.30890 -18.30948 -18.05450 -16.38146 -15.91943 -15.82902 -15.22786 -14.80271 -14.59883 -14.35566 -14.23931 -13.70428 -13.35102 -13.20833 -13.15847 -12.73899 -12.67791 -12.50164 -12.29775 -12.09181 -11.56583 -11.38896 -11.35600 -11.17987 -11.13577 -11.02351 -10.68268 -10.57047 -10.53533 -9.96288 -9.55772 -8.74817 -8.55664 -8.16516 -7.81677 -6.29651 -3.81017 1.59779 1.66749 3.03854 3.07867 3.16049 3.17362 3.77249 3.95655 4.11515 4.48682 4.53501 4.77854 4.81390 4.99113 5.01366 5.14569 5.15896 5.20156 5.22624 5.28502 5.37204 5.54842 5.57441 5.61341 5.61680 5.74026 5.76441 5.91443 5.93449 5.97113 6.05451 6.06654 6.27554 6.48444 6.56905 6.92797 6.97893 7.53979 7.59376 8.16412 8.61264 8.96680 9.44410 9.85273 10.83606 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.002937 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.354858 B = 9530.523107 C = 9703.900717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.063 3.937 5 O -0.317 6.317 6 C 0.119 3.881 7 C -0.151 4.151 8 C -0.067 4.067 9 C -0.081 4.081 10 C -0.097 4.097 11 C 0.452 3.548 12 O -0.568 6.568 13 N -0.592 5.592 14 C -0.305 4.305 15 H 0.119 0.881 16 C 0.040 3.960 17 N -0.882 5.882 18 Si 0.880 3.120 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.067 4.067 23 C -0.207 4.207 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 9.695 -19.667 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.231 6.231 6 C 0.074 3.926 7 C -0.170 4.170 8 C -0.085 4.085 9 C -0.082 4.082 10 C -0.137 4.137 11 C 0.238 3.762 12 O -0.451 6.451 13 N -0.231 5.231 14 C -0.434 4.434 15 H 0.136 0.864 16 C -0.162 4.162 17 N -0.523 5.523 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.085 4.085 23 C -0.226 4.226 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.204 0.796 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.074 10.025 -19.729 23.233 hybrid contribution 1.235 -0.721 0.709 1.596 sum 8.308 9.304 -19.020 22.745 Atomic orbital electron populations 1.21824 0.94312 1.02699 1.01656 1.21119 0.97036 0.95701 0.97441 1.21784 1.01148 0.94933 1.02485 1.22858 0.99301 0.80033 0.99019 1.86001 1.74649 1.20539 1.41897 1.18905 0.95544 0.90824 0.87328 1.20298 1.05052 0.90955 1.00685 1.20790 0.95575 0.99723 0.92376 1.19275 0.99650 0.94148 0.95096 1.20578 0.98972 1.00170 0.94009 1.19748 0.88896 0.84150 0.83411 1.90584 1.30743 1.44767 1.78982 1.42247 1.19586 1.43848 1.17409 1.19445 1.00243 1.28427 0.95244 0.86352 1.25047 0.97680 0.97820 0.95698 1.69629 1.33021 1.41336 1.08275 0.86665 0.83285 0.80723 0.78700 1.19644 1.20204 1.19415 1.20756 0.98208 0.92826 0.96687 1.21097 1.05109 1.00244 0.96155 0.91731 0.92624 0.92632 0.90207 0.92398 0.91802 0.92274 0.92032 0.92256 0.85611 0.85576 0.89385 0.89457 0.79630 0.91646 0.86054 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.09 37.16 0.34 -0.91 16 2 C -0.09 -0.77 3.16 -90.62 -0.29 -1.06 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 4 C 0.06 0.64 4.12 37.16 0.15 0.79 16 5 O -0.32 -4.20 9.67 -19.40 -0.19 -4.38 16 6 C 0.12 1.75 6.69 -39.21 -0.26 1.49 16 7 C -0.15 -2.26 9.99 -39.43 -0.39 -2.65 16 8 C -0.07 -1.05 9.69 -39.61 -0.38 -1.43 16 9 C -0.08 -1.35 4.37 -104.60 -0.46 -1.81 16 10 C -0.10 -1.61 5.83 -29.04 -0.17 -1.78 16 11 C 0.45 10.36 7.78 -10.98 -0.09 10.28 16 12 O -0.57 -15.57 15.61 5.55 0.09 -15.48 16 13 N -0.59 -14.21 5.09 -10.97 -0.06 -14.27 16 14 C -0.30 -8.71 10.16 -14.94 -0.15 -8.86 16 15 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 16 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 17 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 18 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 22 C -0.07 -1.04 9.69 -39.61 -0.38 -1.43 16 23 C -0.21 -2.98 9.04 -39.43 -0.36 -3.34 16 24 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 32 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 35 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 36 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -33.53 337.20 -7.18 -40.71 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.97 Total: 9.12 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.19 Total: -10.27 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.72 Total: -39.49 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.10 Total: -19.87 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.53 -7.18 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.227 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds