Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.53003 * 109.46740 * 119.99953 * 2 1 3 5 5 O 1.42899 * 109.47433 * 64.99998 * 4 2 1 6 6 C 1.35893 * 117.00392 * 179.97438 * 5 4 2 7 7 C 1.38736 * 120.05957 * 180.02562 * 6 5 4 8 8 C 1.38138 * 119.94337 * 180.30421 * 7 6 5 9 9 C 1.38271 * 120.05803 * 359.41293 * 8 7 6 10 10 C 1.50698 * 119.94467 * 180.30180 * 9 8 7 11 11 C 1.50697 * 109.47395 * 270.30647 * 10 9 8 12 12 O 1.21290 * 120.00246 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00183 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00206 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99923 * 0.02562 * 14 13 11 16 16 C 1.38943 * 120.00030 * 180.02562 * 14 13 11 17 17 N 1.31419 * 119.99886 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00313 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47311 * 89.99876 * 18 16 14 20 20 H 1.48497 * 109.47616 * 210.00286 * 18 16 14 21 21 H 1.48506 * 109.46735 * 329.99981 * 18 16 14 22 22 C 1.38259 * 120.10889 * 0.60974 * 9 8 7 23 23 C 1.38146 * 120.05909 * 359.67363 * 22 9 8 24 24 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47302 * 300.00419 * 1 2 3 26 26 H 1.09005 * 109.46518 * 60.00254 * 1 2 3 27 27 H 1.09001 * 109.47302 * 239.99581 * 2 1 3 28 28 H 1.08994 * 109.47095 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47255 * 299.99906 * 3 2 1 30 30 H 1.09001 * 109.46898 * 59.99892 * 3 2 1 31 31 H 1.09002 * 109.47184 * 305.00251 * 4 2 1 32 32 H 1.09001 * 109.46987 * 184.99958 * 4 2 1 33 33 H 1.08002 * 120.02291 * 0.02562 * 7 6 5 34 34 H 1.08004 * 119.96766 * 179.69880 * 8 7 6 35 35 H 1.09000 * 109.47353 * 30.30435 * 10 9 8 36 36 H 1.09002 * 109.47057 * 150.30403 * 10 9 8 37 37 H 0.96997 * 119.99318 * 359.97438 * 13 11 10 38 38 H 0.96996 * 119.99725 * 179.97438 * 17 16 14 39 39 H 1.08006 * 119.97147 * 179.69573 * 22 9 8 40 40 H 1.07993 * 120.03340 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.6619 -2.0982 1.1921 6 6 2.0404 -2.8857 2.2329 7 6 1.7074 -4.2324 2.2423 8 6 2.0880 -5.0294 3.3045 9 6 2.8106 -4.4886 4.3520 10 6 3.2303 -5.3619 5.5063 11 6 2.1559 -5.3486 6.5629 12 8 1.1486 -4.6940 6.3955 13 7 2.3147 -6.0633 7.6945 14 6 1.3375 -6.0508 8.6560 15 1 0.4402 -5.4685 8.5065 16 6 1.5014 -6.7872 9.8228 17 7 0.5649 -6.7747 10.7447 18 14 3.0536 -7.7937 10.0818 19 1 4.0776 -6.9588 10.7595 20 1 2.7421 -8.9761 10.9245 21 1 3.5750 -8.2464 8.7671 22 6 3.1433 -3.1467 4.3453 23 6 2.7601 -2.3441 3.2882 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6052 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 1.1473 -4.6564 1.4220 34 1 1.8247 -6.0768 3.3145 35 1 3.3806 -6.3824 5.1539 36 1 4.1606 -4.9828 5.9292 37 1 3.1204 -6.5865 7.8285 38 1 0.6792 -7.2891 11.5591 39 1 3.7036 -2.7256 5.1670 40 1 3.0205 -1.2961 3.2832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098128258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -87.517178 kcal Electronic energy + Delta-G solvation = -20516.489001 eV Core-core repulsion = 17295.075630 eV Total energy + Delta-G solvation = -3221.413371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22683 -40.26674 -38.64456 -36.25549 -35.93426 -33.78548 -32.86548 -31.95314 -28.82383 -28.06686 -27.43057 -26.05671 -23.72521 -22.53177 -21.23354 -21.05907 -20.18953 -19.12636 -17.68807 -17.30040 -16.88742 -16.82482 -16.30162 -15.81700 -15.41669 -15.29465 -15.01941 -14.87024 -14.53053 -14.33958 -14.27505 -13.96066 -13.57664 -13.22784 -13.08032 -12.97136 -12.67392 -12.46653 -12.37785 -12.14388 -12.02718 -11.97311 -11.89541 -11.53823 -11.50529 -11.47557 -10.46161 -10.24233 -9.89697 -8.99372 -8.40806 -6.01822 0.44580 0.47953 1.31491 1.36758 1.45861 1.97999 2.24006 2.24258 2.70320 3.15581 3.19936 3.75498 3.85037 3.87194 3.94411 3.99741 4.12216 4.31681 4.37945 4.43198 4.48457 4.51558 4.64397 4.67540 4.75530 4.78053 4.84125 4.97456 5.00077 5.13034 5.18007 5.31304 5.37055 5.38612 5.42533 5.56199 5.73218 5.85608 5.96688 6.49524 6.59598 6.88776 7.40810 7.98340 8.77049 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.002937 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.354858 B = 9530.523107 C = 9703.900717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.142 4.142 4 C 0.055 3.945 5 O -0.325 6.325 6 C 0.114 3.886 7 C -0.164 4.164 8 C -0.077 4.077 9 C -0.107 4.107 10 C -0.083 4.083 11 C 0.452 3.548 12 O -0.621 6.621 13 N -0.592 5.592 14 C -0.329 4.329 15 H 0.053 0.947 16 C -0.017 4.017 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.256 1.256 20 H -0.276 1.276 21 H -0.229 1.229 22 C -0.078 4.078 23 C -0.212 4.212 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.391 0.609 38 H 0.279 0.721 39 H 0.133 0.867 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 9.402 -21.012 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.020 4.020 5 O -0.240 6.240 6 C 0.069 3.931 7 C -0.182 4.182 8 C -0.095 4.095 9 C -0.108 4.108 10 C -0.122 4.122 11 C 0.241 3.759 12 O -0.506 6.506 13 N -0.233 5.233 14 C -0.458 4.458 15 H 0.071 0.929 16 C -0.215 4.215 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.152 1.152 22 C -0.097 4.097 23 C -0.230 4.230 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.227 0.773 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.154 9.741 -21.106 25.366 hybrid contribution 0.139 -0.484 1.035 1.151 sum 10.293 9.257 -20.070 24.382 Atomic orbital electron populations 1.21829 0.94764 1.01650 1.02303 1.21148 0.96646 0.96718 0.96480 1.21769 1.01668 0.93434 1.03090 1.23146 1.00285 0.78534 1.00016 1.86007 1.74645 1.21938 1.41363 1.19097 0.95148 0.91127 0.87739 1.20544 1.05254 0.91356 1.01071 1.21021 0.95446 1.00519 0.92536 1.19444 1.01012 0.94805 0.95544 1.20565 0.97388 1.02558 0.91731 1.21008 0.89398 0.81803 0.83714 1.90562 1.33480 1.46479 1.80049 1.42076 1.19382 1.44839 1.17007 1.19010 0.99950 1.29197 0.97641 0.92907 1.26152 1.02345 0.98701 0.94338 1.69815 1.36149 1.42581 1.09152 0.85351 0.77378 0.78225 0.80501 1.18089 1.20102 1.15198 1.21024 0.98434 0.92821 0.97374 1.21356 1.04665 1.01318 0.95666 0.93592 0.92899 0.91108 0.90087 0.91576 0.90677 0.92220 0.92216 0.90890 0.84292 0.84541 0.86081 0.86037 0.77315 0.91170 0.84922 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.09 71.98 0.65 -1.73 16 2 C -0.09 -1.36 3.16 -10.79 -0.03 -1.39 16 3 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 4 C 0.05 1.03 4.12 71.98 0.30 1.33 16 5 O -0.33 -8.34 9.67 -92.34 -0.89 -9.23 16 6 C 0.11 3.27 6.69 22.51 0.15 3.42 16 7 C -0.16 -4.77 9.99 22.37 0.22 -4.55 16 8 C -0.08 -2.36 9.69 22.25 0.22 -2.14 16 9 C -0.11 -3.42 4.37 -19.85 -0.09 -3.51 16 10 C -0.08 -2.53 5.83 29.10 0.17 -2.36 16 11 C 0.45 20.56 7.78 87.66 0.68 21.24 16 12 O -0.62 -35.09 15.61 -3.06 -0.05 -35.13 16 13 N -0.59 -28.03 5.09 -306.99 -1.56 -29.59 16 14 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 15 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 16 C -0.02 -0.95 5.50 84.92 0.47 -0.49 16 17 N -0.94 -56.97 13.96 21.66 0.30 -56.67 16 18 Si 0.97 38.79 27.74 68.60 1.90 40.69 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.23 -7.66 6.52 99.48 0.65 -7.02 16 22 C -0.08 -2.35 9.69 22.25 0.22 -2.14 16 23 C -0.21 -5.82 9.04 22.37 0.20 -5.62 16 24 H 0.04 0.90 7.82 -2.39 -0.02 0.88 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 32 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 33 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 35 H 0.12 2.93 8.09 -2.39 -0.02 2.91 16 36 H 0.12 2.92 8.08 -2.39 -0.02 2.90 16 37 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.14 3.17 6.30 -2.91 -0.02 3.15 16 Total: -1.00 -77.90 337.20 4.81 -73.09 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.44 Total: 34.19 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.67 Total: -17.35 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.26 Total: -86.26 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.94 Total: -44.37 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -77.90 4.81 -73.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.426 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds