Wall clock time and date at job start Mon Mar 30 2020 01:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46442 * 2 1 4 4 C 1.52995 * 109.47177 * 239.99886 * 2 1 3 5 5 N 1.46495 * 109.47095 * 119.99609 * 2 1 3 6 6 C 1.34775 * 120.00172 * 60.00289 * 5 2 1 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 2 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 2 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.09003 * 109.47457 * 300.00016 * 1 2 3 25 25 H 1.08995 * 109.47293 * 60.00456 * 1 2 3 26 26 H 1.09004 * 109.46769 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46733 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47258 * 299.99234 * 3 2 1 29 29 H 1.08998 * 109.47672 * 60.00175 * 3 2 1 30 30 H 1.08995 * 109.46961 * 299.99519 * 4 2 1 31 31 H 1.08995 * 109.47288 * 59.99656 * 4 2 1 32 32 H 1.09005 * 109.47091 * 179.97438 * 4 2 1 33 33 H 0.97005 * 120.00223 * 240.00632 * 5 2 1 34 34 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 35 35 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.6928 -1.9808 1.4096 7 8 0.9959 -2.5705 0.6110 8 6 2.1956 -2.6914 2.6398 9 6 1.6937 -4.1123 2.6396 10 6 2.4425 -5.1085 2.0400 11 6 1.9857 -6.4118 2.0385 12 6 0.7725 -6.7213 2.6396 13 8 0.3209 -8.0015 2.6403 14 6 1.1486 -8.9428 2.1433 15 1 2.0870 -8.6539 1.6938 16 6 0.7947 -10.2819 2.2094 17 7 -0.3483 -10.6340 2.7574 18 14 1.9416 -11.5860 1.5217 19 1 2.8743 -12.0362 2.5860 20 1 1.1442 -12.7427 1.0406 21 1 2.7184 -11.0160 0.3915 22 6 0.0198 -5.7177 3.2353 23 6 0.4850 -4.4174 3.2384 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 2.5760 -0.2190 1.8348 34 1 1.8325 -2.1776 3.5299 35 1 3.2856 -2.6914 2.6394 36 1 3.3860 -4.8672 1.5731 37 1 2.5710 -7.1893 1.5705 38 1 -0.5960 -11.5706 2.8033 39 1 -0.9260 -5.9546 3.6996 40 1 -0.0977 -3.6372 3.7054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110156987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:06 Heat of formation + Delta-G solvation = -50.216751 kcal Electronic energy + Delta-G solvation = -21019.741323 eV Core-core repulsion = 17799.945420 eV Total energy + Delta-G solvation = -3219.795903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11538 -38.85769 -36.92742 -36.01079 -32.61263 -32.16426 -30.77777 -30.07783 -27.58428 -27.33536 -26.54116 -25.05416 -21.91229 -21.70608 -20.13220 -19.56508 -17.91734 -17.09444 -16.81943 -15.96948 -15.24865 -14.62341 -14.51558 -14.33274 -14.07912 -13.85502 -13.63644 -13.42714 -13.35186 -12.72146 -12.61784 -12.55775 -12.25141 -12.19774 -11.88981 -11.67689 -11.46139 -11.24209 -11.18380 -11.13368 -10.76861 -10.69437 -10.56367 -10.38300 -9.38884 -9.26909 -9.04909 -8.76688 -8.08130 -7.09458 -6.39678 -3.98108 2.31637 2.33691 2.86349 3.15100 3.16891 3.21892 3.27221 4.01418 4.53474 4.65513 4.73786 4.89669 5.06952 5.17199 5.29328 5.31609 5.36368 5.39496 5.43594 5.61951 5.62598 5.65997 5.75425 5.79669 5.83233 5.84876 5.91896 6.24591 6.28427 6.29276 6.48702 6.59717 6.77300 6.98433 7.11866 7.30715 7.44066 7.50856 7.60570 7.91115 8.05894 8.44670 9.06157 9.77594 10.78651 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.003310 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.352461 B = 8458.260489 C = 8696.767878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 C -0.154 4.154 4 C -0.165 4.165 5 N -0.735 5.735 6 C 0.511 3.489 7 O -0.516 6.516 8 C -0.082 4.082 9 C -0.168 4.168 10 C -0.057 4.057 11 C -0.232 4.232 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.192 4.192 23 C -0.060 4.060 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 21.476 -2.427 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.223 4.223 5 N -0.389 5.389 6 C 0.298 3.702 7 O -0.390 6.390 8 C -0.121 4.121 9 C -0.169 4.169 10 C -0.075 4.075 11 C -0.252 4.252 12 C 0.103 3.897 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.211 4.211 23 C -0.078 4.078 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.902 20.701 -2.911 21.722 hybrid contribution 0.915 -0.329 -0.101 0.977 sum 6.817 20.372 -3.011 21.692 Atomic orbital electron populations 1.22229 0.94401 1.04287 1.01320 1.20268 0.94372 0.91478 0.85600 1.22079 1.01421 0.94830 1.02797 1.22229 1.00717 1.03123 0.96188 1.46271 1.54876 1.12511 1.25225 1.20980 0.80153 0.81059 0.88035 1.90677 1.36387 1.65695 1.46265 1.20424 1.01528 0.94395 0.95797 1.18632 0.97898 0.92505 1.07860 1.20498 0.98008 0.92371 0.96633 1.21100 0.99043 0.96930 1.08091 1.19382 0.91735 0.86295 0.92297 1.83976 1.41300 1.11393 1.71598 1.21327 1.01774 0.85233 1.38344 0.89111 1.25281 0.97164 0.97098 0.97018 1.70040 1.20783 1.17834 1.41287 0.85719 0.79113 0.79582 0.79053 1.19916 1.20291 1.19211 1.20150 1.01780 0.91763 1.07406 1.20391 0.94517 0.94941 0.97952 0.92910 0.92225 0.90048 0.92097 0.91090 0.92083 0.90044 0.92220 0.92923 0.77075 0.89150 0.89192 0.87906 0.85646 0.92087 0.86604 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.40 37.16 0.31 -1.45 16 2 C 0.17 1.62 1.06 -131.82 -0.14 1.48 16 3 C -0.15 -1.00 8.59 37.16 0.32 -0.68 16 4 C -0.16 -1.78 8.40 37.16 0.31 -1.47 16 5 N -0.73 -7.22 5.10 -47.61 -0.24 -7.46 16 6 C 0.51 6.95 7.24 -10.98 -0.08 6.87 16 7 O -0.52 -9.33 12.24 5.55 0.07 -9.26 16 8 C -0.08 -1.03 5.83 -29.04 -0.17 -1.20 16 9 C -0.17 -2.96 4.38 -104.58 -0.46 -3.42 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 11 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 12 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 13 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 14 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 15 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 18 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 C -0.19 -4.27 9.99 -39.39 -0.39 -4.67 16 23 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 2.66 8.47 -40.82 -0.35 2.32 16 34 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.09 0.93 8.08 -51.93 -0.42 0.52 16 36 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -33.79 333.02 -6.67 -40.46 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.76 Total: 5.17 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.49 Total: -19.45 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.52 Total: -32.62 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.79 -6.67 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110156987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.757 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds