Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46442 * 2 1 4 4 C 1.52995 * 109.47177 * 239.99886 * 2 1 3 5 5 N 1.46495 * 109.47095 * 119.99609 * 2 1 3 6 6 C 1.34775 * 120.00172 * 60.00289 * 5 2 1 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 2 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 2 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.09003 * 109.47457 * 300.00016 * 1 2 3 25 25 H 1.08995 * 109.47293 * 60.00456 * 1 2 3 26 26 H 1.09004 * 109.46769 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46733 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47258 * 299.99234 * 3 2 1 29 29 H 1.08998 * 109.47672 * 60.00175 * 3 2 1 30 30 H 1.08995 * 109.46961 * 299.99519 * 4 2 1 31 31 H 1.08995 * 109.47288 * 59.99656 * 4 2 1 32 32 H 1.09005 * 109.47091 * 179.97438 * 4 2 1 33 33 H 0.97005 * 120.00223 * 240.00632 * 5 2 1 34 34 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 35 35 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.6928 -1.9808 1.4096 7 8 0.9959 -2.5705 0.6110 8 6 2.1956 -2.6914 2.6398 9 6 1.6937 -4.1123 2.6396 10 6 2.4425 -5.1085 2.0400 11 6 1.9857 -6.4118 2.0385 12 6 0.7725 -6.7213 2.6396 13 8 0.3209 -8.0015 2.6403 14 6 1.1486 -8.9428 2.1433 15 1 2.0870 -8.6539 1.6938 16 6 0.7947 -10.2819 2.2094 17 7 -0.3483 -10.6340 2.7574 18 14 1.9416 -11.5860 1.5217 19 1 2.8743 -12.0362 2.5860 20 1 1.1442 -12.7427 1.0406 21 1 2.7184 -11.0160 0.3915 22 6 0.0198 -5.7177 3.2353 23 6 0.4850 -4.4174 3.2384 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 2.5760 -0.2190 1.8348 34 1 1.8325 -2.1776 3.5299 35 1 3.2856 -2.6914 2.6394 36 1 3.3860 -4.8672 1.5731 37 1 2.5710 -7.1893 1.5705 38 1 -0.5960 -11.5706 2.8033 39 1 -0.9260 -5.9546 3.6996 40 1 -0.0977 -3.6372 3.7054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110156987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = -73.323758 kcal Electronic energy + Delta-G solvation = -21020.743318 eV Core-core repulsion = 17799.945420 eV Total energy + Delta-G solvation = -3220.797898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22808 -40.54286 -38.43332 -37.21933 -34.40136 -33.49625 -32.10653 -31.75419 -28.20070 -28.17761 -28.13301 -26.93980 -23.62784 -23.00185 -21.47157 -20.45977 -19.83697 -18.84965 -17.97691 -16.92982 -16.58601 -16.34232 -15.89733 -15.82842 -15.51649 -15.13054 -14.97169 -14.75808 -14.50540 -14.36530 -14.12118 -13.61431 -13.26738 -13.14548 -12.98908 -12.94936 -12.74090 -12.45817 -12.44440 -12.25201 -12.23329 -12.11154 -12.02973 -11.91460 -11.17809 -10.81097 -10.45941 -9.95856 -9.75479 -8.88469 -8.47451 -6.15677 0.62201 0.69110 1.33634 1.43486 1.51719 1.84129 2.17730 2.34476 2.86143 3.19144 3.52526 3.83601 3.94644 4.03034 4.07879 4.16262 4.19919 4.31678 4.51553 4.60540 4.72857 4.73694 4.74472 4.81510 4.86454 4.88871 4.99657 5.03892 5.11053 5.15149 5.25333 5.31597 5.41070 5.42759 5.57885 5.72182 5.75597 5.79716 6.03048 6.24517 6.79644 6.97067 7.50755 7.78886 8.76244 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.003310 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.352461 B = 8458.260489 C = 8696.767878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 C -0.145 4.145 4 C -0.163 4.163 5 N -0.715 5.715 6 C 0.510 3.490 7 O -0.570 6.570 8 C -0.080 4.080 9 C -0.142 4.142 10 C -0.061 4.061 11 C -0.244 4.244 12 C 0.112 3.888 13 O -0.235 6.235 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.020 2.980 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.207 4.207 23 C -0.058 4.058 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.415 0.585 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.273 0.727 39 H 0.111 0.889 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.401 25.215 -2.448 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.203 4.203 4 C -0.221 4.221 5 N -0.369 5.369 6 C 0.297 3.703 7 O -0.448 6.448 8 C -0.119 4.119 9 C -0.143 4.143 10 C -0.079 4.079 11 C -0.263 4.263 12 C 0.062 3.938 13 O -0.141 6.141 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.226 4.226 23 C -0.076 4.076 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.253 0.747 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.578 24.547 -2.909 26.165 hybrid contribution 0.120 -1.077 -0.085 1.087 sum 8.698 23.471 -2.994 25.209 Atomic orbital electron populations 1.22196 0.95446 1.01997 1.02441 1.20386 0.93639 0.93283 0.84787 1.22023 1.02189 0.92126 1.03951 1.22197 1.01159 1.01092 0.97668 1.46089 1.53984 1.11324 1.25525 1.21075 0.79548 0.82044 0.87620 1.90705 1.38936 1.67102 1.48051 1.20546 1.03691 0.90750 0.96950 1.19263 0.96278 0.95147 1.03636 1.20918 0.99497 0.91101 0.96349 1.21222 0.98359 0.98619 1.08147 1.19928 0.93679 0.85707 0.94516 1.83935 1.42918 1.13085 1.74209 1.21827 1.02342 0.86013 1.38904 0.88295 1.26623 0.99044 0.99274 0.97190 1.70189 1.23372 1.18527 1.43994 0.84572 0.76803 0.75950 0.78759 1.18510 1.19482 1.17822 1.20437 1.01721 0.92944 1.07527 1.20862 0.95238 0.94093 0.97386 0.91986 0.90992 0.93929 0.90814 0.90218 0.90752 0.93958 0.90971 0.92066 0.74740 0.85426 0.85679 0.84538 0.86588 0.91818 0.87101 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.40 71.98 0.60 -2.57 16 2 C 0.16 2.65 1.06 3.60 0.00 2.66 16 3 C -0.15 -1.23 8.59 71.98 0.62 -0.61 16 4 C -0.16 -3.22 8.40 71.98 0.60 -2.61 16 5 N -0.71 -11.15 5.10 -422.92 -2.16 -13.31 16 6 C 0.51 12.17 7.24 87.66 0.63 12.81 16 7 O -0.57 -19.97 12.24 -3.05 -0.04 -20.01 16 8 C -0.08 -1.61 5.83 29.10 0.17 -1.44 16 9 C -0.14 -4.62 4.38 -19.84 -0.09 -4.71 16 10 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 11 C -0.24 -11.47 9.17 22.39 0.21 -11.26 16 12 C 0.11 5.97 6.65 22.58 0.15 6.12 16 13 O -0.23 -14.92 9.76 -22.72 -0.22 -15.14 16 14 C -0.41 -25.33 9.49 67.92 0.64 -24.69 16 15 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 16 C -0.02 -1.43 5.49 84.84 0.47 -0.96 16 17 N -0.92 -58.54 13.67 21.62 0.30 -58.24 16 18 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 22 C -0.21 -9.53 9.99 22.39 0.22 -9.31 16 23 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.19 6.17 -2.38 -0.01 1.17 16 27 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.04 1.19 6.17 -2.39 -0.01 1.18 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.42 3.31 8.47 -92.70 -0.79 2.52 16 34 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 36 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 38 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 40 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -82.18 333.02 4.83 -77.34 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.26 Total: 23.41 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.67 Total: -40.49 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.86 Total: -71.55 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.26 Total: -35.15 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -82.18 4.83 -77.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110156987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.018 kcal (2) G-P(sol) polarization free energy of solvation -82.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds