Wall clock time and date at job start Mon Mar 30 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47156 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00172 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47517 * 59.99414 * 18 16 14 20 20 H 1.48505 * 109.47332 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46989 * 299.99567 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08996 * 109.47097 * 60.00099 * 1 2 3 25 25 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46894 * 300.00092 * 1 2 3 27 27 H 1.09003 * 109.46894 * 239.99908 * 2 1 3 28 28 H 1.08994 * 109.47609 * 120.00009 * 2 1 3 29 29 H 1.08998 * 109.47318 * 59.99662 * 3 2 1 30 30 H 1.09005 * 109.46796 * 299.99942 * 3 2 1 31 31 H 1.08998 * 109.47672 * 59.99342 * 4 3 2 32 32 H 1.09005 * 109.46733 * 299.99443 * 4 3 2 33 33 H 0.97005 * 120.00223 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 35 35 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 5.3834 3.0700 -0.0014 7 8 6.1716 2.1481 -0.0014 8 6 5.8858 4.4909 -0.0026 9 6 7.3927 4.4908 -0.0031 10 6 8.0824 4.4899 -1.2019 11 6 9.4634 4.4904 -1.2057 12 6 10.1597 4.4912 -0.0040 13 8 11.5172 4.4923 -0.0045 14 6 12.1287 4.6083 -1.2005 15 1 11.5435 4.6129 -2.1081 16 6 13.5092 4.7218 -1.2651 17 7 14.2221 4.7168 -0.1595 18 14 14.3565 4.8834 -2.9220 19 1 13.8635 6.1016 -3.6135 20 1 15.8238 4.9893 -2.7195 21 1 14.0556 3.6881 -3.7504 22 6 9.4643 4.4857 1.1981 23 6 8.0833 4.4910 1.1952 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.4280 3.5610 -0.0016 34 1 5.5224 5.0054 0.8870 35 1 5.5225 5.0039 -0.8930 36 1 7.5404 4.4897 -2.1360 37 1 10.0013 4.4902 -2.1422 38 1 15.1878 4.7958 -0.2047 39 1 10.0029 4.4819 2.1342 40 1 7.5419 4.4912 2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110157324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:09 Heat of formation + Delta-G solvation = -61.517307 kcal Electronic energy + Delta-G solvation = -20175.212367 eV Core-core repulsion = 16954.926435 eV Total energy + Delta-G solvation = -3220.285932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.75631 -38.74545 -36.70406 -36.10981 -33.80406 -32.41691 -31.37918 -30.08656 -29.18290 -26.54131 -25.10283 -23.53256 -21.90622 -21.65421 -20.95946 -19.89535 -17.91765 -17.00503 -16.77754 -16.21334 -16.01814 -15.15961 -14.55564 -14.42910 -14.22455 -14.04454 -13.71167 -13.59386 -13.39569 -13.30170 -12.69315 -12.63756 -12.47250 -11.96800 -11.71298 -11.52213 -11.49915 -11.43079 -11.20444 -11.01518 -10.78181 -10.69246 -10.58710 -10.39024 -9.65100 -9.27044 -9.09221 -8.76433 -8.08176 -7.09728 -6.39277 -3.97773 2.31580 2.33266 2.83675 3.16356 3.16886 3.20606 3.27069 4.01691 4.47080 4.54393 4.58574 4.69652 5.00531 5.02151 5.15937 5.17032 5.27031 5.31192 5.37152 5.39050 5.42790 5.52687 5.64626 5.71314 5.76370 5.79864 5.86871 5.91653 5.93431 6.28203 6.40777 6.48570 6.77144 6.98343 7.11583 7.30369 7.43736 7.49721 7.53151 7.90941 8.06063 8.38658 9.06291 9.77599 10.78859 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038824 B = 0.002662 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.037022 B =10517.411332 C =10781.664070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.742 5.742 6 C 0.507 3.493 7 O -0.521 6.521 8 C -0.080 4.080 9 C -0.170 4.170 10 C -0.057 4.057 11 C -0.232 4.232 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.192 4.192 23 C -0.060 4.060 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.511 -2.703 -0.541 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.006 4.006 5 N -0.397 5.397 6 C 0.294 3.706 7 O -0.395 6.395 8 C -0.120 4.120 9 C -0.171 4.171 10 C -0.075 4.075 11 C -0.252 4.252 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.211 4.211 23 C -0.078 4.078 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.475 -3.398 -0.294 23.722 hybrid contribution 0.044 0.354 -0.897 0.966 sum -23.431 -3.044 -1.192 23.658 Atomic orbital electron populations 1.21764 0.95575 1.01776 1.01824 1.21445 0.96007 0.96041 1.02629 1.21825 0.94402 0.97975 1.02645 1.21320 0.93353 0.83606 1.02347 1.46110 1.07454 1.08399 1.77692 1.21079 0.81500 0.92429 0.75634 1.90747 1.55083 1.46412 1.47259 1.20405 0.94896 0.92861 1.03807 1.18641 0.92024 1.12718 0.93718 1.20506 0.93636 0.97217 0.96164 1.21101 0.94069 1.11611 0.98392 1.19388 0.84881 0.92188 0.93282 1.83975 1.12851 1.78480 1.32889 1.21278 0.90180 1.52117 0.83142 0.89156 1.25285 0.95417 0.96635 0.99246 1.70031 1.06769 1.46094 1.27007 0.85784 0.78259 0.79156 0.80232 1.19541 1.20317 1.19530 1.20152 0.93321 1.11420 0.96204 1.20399 0.93107 0.97992 0.96316 0.92710 0.92618 0.92713 0.91622 0.91617 0.91348 0.91363 0.91736 0.91719 0.76916 0.89013 0.89055 0.87852 0.85604 0.92037 0.86554 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 4 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 5 N -0.74 -7.38 5.56 -60.29 -0.33 -7.72 16 6 C 0.51 7.21 7.82 -10.98 -0.09 7.13 16 7 O -0.52 -10.18 16.03 5.55 0.09 -10.09 16 8 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 9 C -0.17 -3.05 4.38 -104.58 -0.46 -3.51 16 10 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 11 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 12 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 13 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 14 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 15 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 18 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.19 -4.31 9.99 -39.39 -0.39 -4.70 16 23 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 2.60 8.47 -40.82 -0.35 2.26 16 34 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -34.76 342.19 -7.57 -42.33 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.96 Total: 3.24 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.25 Total: -18.47 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.42 Total: -32.87 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.76 -7.57 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110157324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.192 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds