Wall clock time and date at job start Mon Mar 30 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47156 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00172 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47517 * 59.99414 * 18 16 14 20 20 H 1.48505 * 109.47332 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46989 * 299.99567 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08996 * 109.47097 * 60.00099 * 1 2 3 25 25 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46894 * 300.00092 * 1 2 3 27 27 H 1.09003 * 109.46894 * 239.99908 * 2 1 3 28 28 H 1.08994 * 109.47609 * 120.00009 * 2 1 3 29 29 H 1.08998 * 109.47318 * 59.99662 * 3 2 1 30 30 H 1.09005 * 109.46796 * 299.99942 * 3 2 1 31 31 H 1.08998 * 109.47672 * 59.99342 * 4 3 2 32 32 H 1.09005 * 109.46733 * 299.99443 * 4 3 2 33 33 H 0.97005 * 120.00223 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 35 35 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 5.3834 3.0700 -0.0014 7 8 6.1716 2.1481 -0.0014 8 6 5.8858 4.4909 -0.0026 9 6 7.3927 4.4908 -0.0031 10 6 8.0824 4.4899 -1.2019 11 6 9.4634 4.4904 -1.2057 12 6 10.1597 4.4912 -0.0040 13 8 11.5172 4.4923 -0.0045 14 6 12.1287 4.6083 -1.2005 15 1 11.5435 4.6129 -2.1081 16 6 13.5092 4.7218 -1.2651 17 7 14.2221 4.7168 -0.1595 18 14 14.3565 4.8834 -2.9220 19 1 13.8635 6.1016 -3.6135 20 1 15.8238 4.9893 -2.7195 21 1 14.0556 3.6881 -3.7504 22 6 9.4643 4.4857 1.1981 23 6 8.0833 4.4910 1.1952 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.4280 3.5610 -0.0016 34 1 5.5224 5.0054 0.8870 35 1 5.5225 5.0039 -0.8930 36 1 7.5404 4.4897 -2.1360 37 1 10.0013 4.4902 -2.1422 38 1 15.1878 4.7958 -0.2047 39 1 10.0029 4.4819 2.1342 40 1 7.5419 4.4912 2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110157324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:08 Heat of formation + Delta-G solvation = -85.150348 kcal Electronic energy + Delta-G solvation = -20176.237173 eV Core-core repulsion = 16954.926435 eV Total energy + Delta-G solvation = -3221.310738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07117 -40.36322 -38.27271 -37.03782 -34.62224 -34.38493 -32.84118 -31.77347 -30.01319 -28.03981 -26.93579 -24.30960 -23.63140 -22.44981 -22.21515 -21.04473 -19.83835 -18.85135 -17.87490 -17.11338 -16.94358 -16.45256 -16.31150 -15.79442 -15.71508 -15.50503 -15.04391 -14.73159 -14.50034 -14.37113 -14.32206 -14.02045 -13.58562 -13.24611 -12.95462 -12.80472 -12.46288 -12.42744 -12.30526 -12.26800 -12.13745 -12.03029 -11.96590 -11.49383 -11.17946 -10.90108 -10.72167 -10.03876 -9.75880 -8.89463 -8.46912 -6.15254 0.61897 0.68060 1.33829 1.45138 1.50727 1.75546 2.18132 2.30816 2.86006 3.18943 3.52299 3.87679 3.91229 4.03102 4.06696 4.13134 4.19837 4.30409 4.44554 4.51631 4.60295 4.66409 4.72234 4.74039 4.81318 4.93827 4.96530 5.07694 5.11558 5.15026 5.27577 5.31385 5.37351 5.46576 5.54676 5.57202 5.71990 5.78730 6.03002 6.23967 6.67545 6.97219 7.39963 7.78778 8.76316 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038824 B = 0.002662 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.037022 B =10517.411332 C =10781.664070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.118 4.118 4 C 0.116 3.884 5 N -0.720 5.720 6 C 0.507 3.493 7 O -0.585 6.585 8 C -0.077 4.077 9 C -0.146 4.146 10 C -0.061 4.061 11 C -0.245 4.245 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.021 2.979 19 H -0.255 1.255 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.207 4.207 23 C -0.058 4.058 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.419 0.581 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.273 0.727 39 H 0.112 0.888 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.547 -1.845 -1.635 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.008 4.008 5 N -0.373 5.373 6 C 0.294 3.706 7 O -0.464 6.464 8 C -0.116 4.116 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.264 4.264 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.184 1.184 22 C -0.227 4.227 23 C -0.076 4.076 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.256 0.744 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.637 -2.512 -1.382 27.786 hybrid contribution 0.882 0.048 -0.452 0.992 sum -26.755 -2.464 -1.834 26.931 Atomic orbital electron populations 1.21746 0.94626 1.02062 1.02307 1.21464 0.96795 0.95946 1.02193 1.21749 0.91625 0.98310 1.03907 1.21366 0.95556 0.82990 1.00893 1.45906 1.06529 1.09467 1.75442 1.21251 0.82310 0.92167 0.74823 1.90753 1.56862 1.48190 1.50634 1.20534 0.90622 0.92765 1.07717 1.19291 0.95382 1.07612 0.92445 1.20946 0.92262 0.96095 0.98621 1.21234 0.95845 1.12091 0.97222 1.19950 0.84112 0.94460 0.95402 1.83935 1.15016 1.81589 1.33524 1.21787 0.91056 1.52666 0.83622 0.88268 1.26639 0.95774 0.95893 1.03929 1.70184 1.07147 1.48718 1.29914 0.84627 0.76977 0.79865 0.74582 1.17942 1.19448 1.18368 1.20447 0.95119 1.11835 0.95260 1.20888 0.91682 0.96306 0.98762 0.92216 0.92539 0.92196 0.92166 0.92128 0.89996 0.90054 0.93338 0.93255 0.74387 0.85017 0.85265 0.84372 0.86460 0.91826 0.87000 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.13 -1.27 5.93 30.59 0.18 -1.08 16 3 C -0.12 -1.10 5.33 30.60 0.16 -0.94 16 4 C 0.12 1.93 5.67 86.38 0.49 2.42 16 5 N -0.72 -11.42 5.56 -463.05 -2.57 -13.99 16 6 C 0.51 12.54 7.82 87.66 0.69 13.22 16 7 O -0.59 -21.90 16.03 -3.05 -0.05 -21.95 16 8 C -0.08 -1.55 5.83 29.10 0.17 -1.38 16 9 C -0.15 -4.78 4.38 -19.84 -0.09 -4.87 16 10 C -0.06 -2.27 9.69 22.25 0.22 -2.06 16 11 C -0.24 -11.50 9.17 22.39 0.21 -11.29 16 12 C 0.11 5.93 6.65 22.58 0.15 6.08 16 13 O -0.23 -14.86 9.76 -22.72 -0.22 -15.08 16 14 C -0.42 -25.32 9.49 67.92 0.64 -24.68 16 15 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 16 C -0.03 -1.48 5.49 84.84 0.47 -1.02 16 17 N -0.92 -58.38 13.67 21.62 0.30 -58.09 16 18 Si 1.02 44.34 29.55 68.60 2.03 46.37 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 C -0.21 -9.56 9.99 22.39 0.22 -9.33 16 23 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 24 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.98 16 33 H 0.42 3.20 8.47 -92.70 -0.79 2.41 16 34 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 36 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 38 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -83.38 342.19 4.17 -79.22 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.25 Total: 20.81 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 4.44 Total: -37.28 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -2.28 Total: -72.08 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.27 Total: -37.04 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -83.38 4.17 -79.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110157324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.933 kcal (2) G-P(sol) polarization free energy of solvation -83.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds