Wall clock time and date at job start Mon Mar 30 2020 01:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 C 1.53004 * 109.46600 * 119.99543 * 2 1 3 5 5 N 1.46495 * 109.47156 * 65.00486 * 4 2 1 6 6 C 1.34775 * 120.00172 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08995 * 109.47155 * 60.00530 * 1 2 3 25 25 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47370 * 300.00212 * 1 2 3 27 27 H 1.08995 * 109.46934 * 239.99957 * 2 1 3 28 28 H 1.08996 * 109.46799 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46636 * 300.00217 * 3 2 1 30 30 H 1.08999 * 109.47217 * 59.99694 * 3 2 1 31 31 H 1.08998 * 109.47672 * 304.99883 * 4 2 1 32 32 H 1.09005 * 109.46733 * 184.99985 * 4 2 1 33 33 H 0.97005 * 120.00223 * 359.97438 * 5 4 2 34 34 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 35 35 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6524 -2.1327 1.1907 6 6 1.9963 -2.9681 2.1909 7 8 2.6262 -2.5511 3.1398 8 6 1.5972 -4.4201 2.1309 9 6 2.0995 -5.1304 3.3614 10 6 1.3056 -5.1976 4.4918 11 6 1.7628 -5.8483 5.6208 12 6 3.0216 -6.4350 5.6205 13 8 3.4737 -7.0757 6.7286 14 6 2.6095 -7.2068 7.7552 15 1 1.6369 -6.7401 7.7053 16 6 2.9696 -7.9408 8.8751 17 7 4.1542 -8.5098 8.9358 18 14 1.7721 -8.1231 10.2971 19 1 0.9305 -9.3279 10.0843 20 1 2.5292 -8.2659 11.5666 21 1 0.9045 -6.9201 10.3709 22 6 3.8191 -6.3603 4.4859 23 6 3.3538 -5.7131 3.3581 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6053 -0.2616 2.1371 32 1 3.1263 -0.6443 1.2953 33 1 1.1483 -2.4662 0.4320 34 1 2.0313 -4.8797 1.2430 35 1 0.5109 -4.4967 2.0856 36 1 0.3266 -4.7416 4.4913 37 1 1.1422 -5.9008 6.5030 38 1 4.4063 -9.0229 9.7193 39 1 4.8002 -6.8117 4.4841 40 1 3.9716 -5.6586 2.4740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110160539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:12 Heat of formation + Delta-G solvation = -58.691172 kcal Electronic energy + Delta-G solvation = -20454.922953 eV Core-core repulsion = 17234.759571 eV Total energy + Delta-G solvation = -3220.163382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80576 -38.77656 -37.00894 -36.25236 -33.32698 -32.39617 -31.24615 -30.08281 -27.57448 -27.35073 -25.69566 -24.77615 -21.90601 -21.05203 -20.78756 -19.85566 -17.91779 -17.02914 -16.79543 -16.31691 -15.64846 -15.01872 -14.54979 -14.28421 -14.25408 -14.13887 -13.58870 -13.45505 -13.40956 -13.13556 -12.76621 -12.63651 -12.48548 -12.33321 -11.77581 -11.52066 -11.46195 -11.27076 -11.21221 -11.08897 -10.78111 -10.69931 -10.56424 -10.38197 -9.64940 -9.26830 -9.07500 -8.76783 -8.08090 -7.09637 -6.39513 -3.97906 2.31655 2.33402 2.84501 3.15418 3.17042 3.22084 3.29191 4.01571 4.39819 4.50595 4.60448 4.66659 5.03467 5.16494 5.16930 5.24243 5.29204 5.33753 5.34897 5.39623 5.44473 5.58184 5.61051 5.72372 5.73822 5.79771 5.88394 5.91680 5.94951 6.28309 6.42282 6.48666 6.77217 6.98402 7.11823 7.30557 7.43881 7.50003 7.53612 7.91008 8.06037 8.39515 9.06271 9.77650 10.78775 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036709 B = 0.002879 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.563313 B = 9722.745722 C = 9972.024034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.123 3.877 5 N -0.741 5.741 6 C 0.507 3.493 7 O -0.521 6.521 8 C -0.080 4.080 9 C -0.169 4.169 10 C -0.057 4.057 11 C -0.232 4.232 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.192 4.192 23 C -0.060 4.060 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 13.452 -18.563 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.203 4.203 4 C -0.001 4.001 5 N -0.395 5.395 6 C 0.294 3.706 7 O -0.395 6.395 8 C -0.120 4.120 9 C -0.171 4.171 10 C -0.075 4.075 11 C -0.252 4.252 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.211 4.211 23 C -0.078 4.078 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.109 13.515 -17.604 23.304 hybrid contribution -0.887 -0.142 0.344 0.961 sum -7.995 13.373 -17.260 23.253 Atomic orbital electron populations 1.21873 0.94720 1.01966 1.02073 1.21358 0.96443 0.96930 0.97969 1.21767 1.01327 0.95051 1.02195 1.21374 1.00006 0.80954 0.97775 1.46118 1.59370 1.09637 1.24383 1.21065 0.79194 0.88525 0.81854 1.90747 1.38351 1.77759 1.32664 1.20404 1.02072 0.90789 0.98716 1.18641 0.96729 1.06650 0.95056 1.20503 0.97991 0.96689 0.92329 1.21102 0.98094 1.06269 0.99695 1.19388 0.91806 0.90925 0.87610 1.83976 1.39058 1.65136 1.20060 1.21328 0.97692 1.33521 0.94134 0.89106 1.25285 0.97237 0.95716 0.98348 1.70041 1.19006 1.31319 1.29551 0.85714 0.79196 0.79027 0.79497 1.19915 1.20293 1.19219 1.20152 1.00935 1.07820 0.92182 1.20398 0.94346 0.96303 0.96765 0.92495 0.92544 0.92365 0.90622 0.92308 0.92252 0.92283 0.91666 0.91705 0.76932 0.89036 0.89085 0.87864 0.85606 0.92088 0.86559 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.07 37.16 0.34 -0.54 16 2 C -0.11 -0.70 2.96 -90.61 -0.27 -0.97 16 3 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 4 C 0.12 1.17 5.06 -4.04 -0.02 1.15 16 5 N -0.74 -7.36 5.28 -60.29 -0.32 -7.68 16 6 C 0.51 7.19 7.82 -10.98 -0.09 7.11 16 7 O -0.52 -10.16 16.03 5.55 0.09 -10.07 16 8 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 9 C -0.17 -3.05 4.38 -104.58 -0.46 -3.50 16 10 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 11 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 12 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 13 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 14 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 15 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 18 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 23 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.31 7.18 -51.93 -0.37 -0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 2.68 7.65 -40.82 -0.31 2.36 16 34 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -34.66 339.57 -7.16 -41.83 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.88 Total: 3.41 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.91 Total: -18.15 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.44 Total: -32.85 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.66 -7.16 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110160539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.866 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds