Wall clock time and date at job start Mon Mar 30 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 C 1.53004 * 109.46600 * 119.99543 * 2 1 3 5 5 N 1.46495 * 109.47156 * 65.00486 * 4 2 1 6 6 C 1.34775 * 120.00172 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08995 * 109.47155 * 60.00530 * 1 2 3 25 25 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47370 * 300.00212 * 1 2 3 27 27 H 1.08995 * 109.46934 * 239.99957 * 2 1 3 28 28 H 1.08996 * 109.46799 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46636 * 300.00217 * 3 2 1 30 30 H 1.08999 * 109.47217 * 59.99694 * 3 2 1 31 31 H 1.08998 * 109.47672 * 304.99883 * 4 2 1 32 32 H 1.09005 * 109.46733 * 184.99985 * 4 2 1 33 33 H 0.97005 * 120.00223 * 359.97438 * 5 4 2 34 34 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 35 35 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6524 -2.1327 1.1907 6 6 1.9963 -2.9681 2.1909 7 8 2.6262 -2.5511 3.1398 8 6 1.5972 -4.4201 2.1309 9 6 2.0995 -5.1304 3.3614 10 6 1.3056 -5.1976 4.4918 11 6 1.7628 -5.8483 5.6208 12 6 3.0216 -6.4350 5.6205 13 8 3.4737 -7.0757 6.7286 14 6 2.6095 -7.2068 7.7552 15 1 1.6369 -6.7401 7.7053 16 6 2.9696 -7.9408 8.8751 17 7 4.1542 -8.5098 8.9358 18 14 1.7721 -8.1231 10.2971 19 1 0.9305 -9.3279 10.0843 20 1 2.5292 -8.2659 11.5666 21 1 0.9045 -6.9201 10.3709 22 6 3.8191 -6.3603 4.4859 23 6 3.3538 -5.7131 3.3581 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6053 -0.2616 2.1371 32 1 3.1263 -0.6443 1.2953 33 1 1.1483 -2.4662 0.4320 34 1 2.0313 -4.8797 1.2430 35 1 0.5109 -4.4967 2.0856 36 1 0.3266 -4.7416 4.4913 37 1 1.1422 -5.9008 6.5030 38 1 4.4063 -9.0229 9.7193 39 1 4.8002 -6.8117 4.4841 40 1 3.9716 -5.6586 2.4740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110160539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:11 Heat of formation + Delta-G solvation = -82.260113 kcal Electronic energy + Delta-G solvation = -20455.944979 eV Core-core repulsion = 17234.759571 eV Total energy + Delta-G solvation = -3221.185408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08902 -40.39777 -38.34221 -37.45427 -34.41099 -34.20830 -32.72008 -31.77129 -28.67258 -28.02531 -27.36388 -26.12980 -23.63164 -22.54586 -21.54060 -20.91787 -19.83814 -18.85105 -17.88883 -17.29026 -16.71812 -16.33674 -16.27466 -15.82341 -15.55739 -15.44864 -14.98166 -14.88015 -14.48774 -14.31762 -14.11515 -13.85370 -13.60237 -13.33389 -12.97583 -12.92137 -12.71494 -12.46664 -12.29520 -12.25974 -12.11716 -11.98441 -11.83015 -11.61901 -11.17942 -10.91025 -10.72786 -10.02915 -9.75833 -8.89434 -8.47282 -6.15506 0.61935 0.68038 1.33890 1.43723 1.51989 1.76128 2.17895 2.31887 2.86059 3.18994 3.52257 3.81520 3.88404 3.97075 4.06394 4.13911 4.18817 4.26828 4.49955 4.60408 4.61757 4.69269 4.72964 4.81275 4.82060 4.87770 5.01953 5.05905 5.10054 5.15049 5.23954 5.31177 5.38643 5.43266 5.56797 5.57839 5.72016 5.78759 6.03045 6.23915 6.67120 6.97138 7.40022 7.78745 8.76307 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036709 B = 0.002879 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.563313 B = 9722.745722 C = 9972.024034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.121 3.879 5 N -0.718 5.718 6 C 0.507 3.493 7 O -0.585 6.585 8 C -0.077 4.077 9 C -0.146 4.146 10 C -0.061 4.061 11 C -0.244 4.244 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.021 2.979 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.207 4.207 23 C -0.058 4.058 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.417 0.583 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.273 0.727 39 H 0.112 0.888 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 14.839 -21.679 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.003 4.003 5 N -0.372 5.372 6 C 0.295 3.705 7 O -0.464 6.464 8 C -0.117 4.117 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.264 4.264 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.840 3.160 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.226 4.226 23 C -0.076 4.076 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.737 14.936 -20.832 27.421 hybrid contribution -0.120 -0.368 0.934 1.011 sum -9.857 14.569 -19.899 26.559 Atomic orbital electron populations 1.21881 0.93960 1.02497 1.02268 1.21308 0.96927 0.96797 0.96651 1.21789 1.01197 0.94894 1.02616 1.21424 0.99171 0.80820 0.98868 1.45908 1.58029 1.09377 1.23837 1.21232 0.78378 0.89276 0.81618 1.90753 1.41520 1.78871 1.35263 1.20534 1.04592 0.89308 0.97231 1.19287 0.95416 1.03635 0.96369 1.20938 0.99737 0.95700 0.91523 1.21229 0.97296 1.06874 1.00967 1.19946 0.93746 0.92386 0.87816 1.83936 1.40534 1.67961 1.21648 1.21827 0.98261 1.34207 0.94781 0.88278 1.26632 0.99369 0.94941 1.01240 1.70189 1.21592 1.33306 1.30936 0.84564 0.76624 0.79699 0.75144 1.18503 1.19494 1.17844 1.20445 1.00832 1.08596 0.92759 1.20885 0.95312 0.94764 0.96657 0.91185 0.91835 0.93366 0.89134 0.92618 0.90824 0.92902 0.93393 0.93168 0.74523 0.85039 0.85314 0.84412 0.86504 0.91820 0.87002 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.07 71.98 0.65 -0.59 16 2 C -0.10 -0.97 2.96 -10.79 -0.03 -1.00 16 3 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 4 C 0.12 2.06 5.06 86.38 0.44 2.50 16 5 N -0.72 -11.51 5.28 -463.05 -2.45 -13.96 16 6 C 0.51 12.56 7.82 87.66 0.69 13.24 16 7 O -0.58 -21.88 16.03 -3.05 -0.05 -21.92 16 8 C -0.08 -1.56 5.83 29.10 0.17 -1.39 16 9 C -0.15 -4.77 4.38 -19.84 -0.09 -4.86 16 10 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 11 C -0.24 -11.49 9.17 22.39 0.21 -11.28 16 12 C 0.11 5.94 6.65 22.58 0.15 6.09 16 13 O -0.23 -14.87 9.76 -22.72 -0.22 -15.09 16 14 C -0.41 -25.30 9.49 67.92 0.64 -24.65 16 15 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 16 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 17 N -0.92 -58.43 13.67 21.62 0.30 -58.14 16 18 Si 1.02 44.37 29.55 68.60 2.03 46.40 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 22 C -0.21 -9.54 9.99 22.39 0.22 -9.31 16 23 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 24 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.06 0.44 7.18 -2.38 -0.02 0.42 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.42 3.43 7.65 -92.70 -0.71 2.72 16 34 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 36 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 38 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -83.17 339.57 4.54 -78.62 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.33 Total: 21.02 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 4.61 Total: -36.94 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -2.15 Total: -72.09 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.27 Total: -37.01 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -83.17 4.54 -78.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110160539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.637 kcal (2) G-P(sol) polarization free energy of solvation -83.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds