Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47604 * 120.00161 * 2 1 3 5 5 C 1.50700 * 109.46849 * 64.99781 * 4 2 1 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99813 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47176 * 299.99747 * 1 2 3 25 25 H 1.09001 * 109.47353 * 59.99812 * 1 2 3 26 26 H 1.09000 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47176 * 240.00253 * 2 1 3 28 28 H 1.08997 * 109.47430 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47233 * 300.00261 * 3 2 1 30 30 H 1.08998 * 109.46962 * 60.00122 * 3 2 1 31 31 H 1.09008 * 109.46644 * 305.00198 * 4 2 1 32 32 H 1.08998 * 109.47635 * 185.00394 * 4 2 1 33 33 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 35 35 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1887 6 8 1.0117 -2.5903 0.2399 7 7 1.9846 -3.0085 2.1893 8 6 1.5975 -4.4203 2.1304 9 6 2.0988 -5.1304 3.3615 10 6 3.3531 -5.7136 3.3600 11 6 3.8164 -6.3666 4.4875 12 6 3.0300 -6.4326 5.6211 13 6 1.7682 -5.8531 5.6238 14 8 0.9906 -5.9215 6.7344 15 6 1.4505 -6.6683 7.7585 16 1 2.4337 -7.1118 7.7046 17 6 0.6610 -6.8668 8.8809 18 7 -0.5369 -6.3270 8.9465 19 14 1.2978 -7.9021 10.2995 20 1 2.6629 -8.3923 9.9807 21 1 1.3444 -7.0764 11.5329 22 1 0.3928 -9.0600 10.5127 23 6 1.3054 -5.1985 4.4895 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2951 33 1 2.4879 -2.6749 2.9485 34 1 2.0329 -4.8795 1.2429 35 1 0.5113 -4.4975 2.0838 36 1 3.9718 -5.6589 2.4765 37 1 4.7959 -6.8213 4.4831 38 1 3.3945 -6.9383 6.5031 39 1 -1.0893 -6.4663 9.7315 40 1 0.3259 -4.7435 4.4897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113105222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -61.774321 kcal Electronic energy + Delta-G solvation = -20487.551922 eV Core-core repulsion = 17267.254845 eV Total energy + Delta-G solvation = -3220.297077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91167 -39.07149 -36.92704 -35.73769 -34.41528 -32.35925 -31.00354 -29.27762 -28.33292 -27.21662 -25.74969 -24.94547 -21.75012 -21.13288 -20.76541 -19.88832 -17.93129 -17.26590 -16.72722 -16.01126 -15.57954 -15.21497 -14.81550 -14.57159 -14.37903 -13.97551 -13.74686 -13.62003 -13.55377 -12.80633 -12.48826 -12.44276 -12.40740 -12.16391 -11.92696 -11.68803 -11.41027 -11.23182 -11.03050 -10.94075 -10.83742 -10.81610 -10.71526 -10.47902 -9.72777 -9.42822 -8.95322 -8.91423 -8.25992 -7.35264 -6.51309 -4.10846 1.88745 2.24507 2.70503 3.07672 3.09805 3.15312 3.41221 3.90689 4.47223 4.60586 4.74671 4.77418 4.92275 5.04728 5.15759 5.27837 5.34294 5.43557 5.48189 5.53326 5.56136 5.72568 5.76145 5.81886 5.83360 5.90253 6.00441 6.05868 6.21757 6.23132 6.32622 6.52954 6.54579 6.79413 6.97564 7.16653 7.25063 7.33441 7.59352 7.69646 7.92931 8.29902 8.94183 9.62684 10.66528 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.003055 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.874963 B = 9163.384136 C = 9692.093016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.510 3.490 6 O -0.544 6.544 7 N -0.723 5.723 8 C 0.167 3.833 9 C -0.073 4.073 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.151 3.849 14 O -0.177 6.177 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.171 4.171 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.918 9.493 -11.930 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.179 4.179 5 C 0.297 3.703 6 O -0.422 6.422 7 N -0.374 5.374 8 C 0.044 3.956 9 C -0.073 4.073 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.246 4.246 13 C 0.097 3.903 14 O -0.080 6.080 15 C -0.469 4.469 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.191 4.191 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.237 0.763 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.031 9.290 -12.382 16.613 hybrid contribution 0.661 -0.484 1.262 1.505 sum 6.691 8.806 -11.119 15.683 Atomic orbital electron populations 1.21966 0.94733 1.03522 1.00920 1.20848 0.96683 0.95177 0.97195 1.21869 1.00801 0.95940 1.01932 1.21791 1.02817 0.92275 1.00981 1.20724 0.79194 0.88282 0.82135 1.90652 1.40037 1.78080 1.33406 1.46204 1.57719 1.09776 1.23712 1.20137 0.99985 0.79766 0.95663 1.19280 0.94726 0.99528 0.93809 1.20478 0.96521 1.05740 0.98777 1.20746 0.98386 0.97473 0.92808 1.21245 0.95755 1.07688 0.99890 1.19323 0.90136 0.93134 0.87723 1.83982 1.42945 1.61090 1.19967 1.21374 1.02242 1.29251 0.94060 0.88978 1.25302 0.95206 0.97607 0.98372 1.70042 1.08623 1.41477 1.29388 0.85641 0.78866 0.79023 0.79857 1.19087 1.20104 1.20080 1.20086 1.00973 1.06488 0.91573 0.93338 0.93106 0.90583 0.90523 0.92744 0.92499 0.92617 0.88855 0.89011 0.76275 0.91050 0.90952 0.87534 0.87284 0.85451 0.91980 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.93 37.15 0.33 -1.28 16 2 C -0.08 -0.76 2.57 -90.62 -0.23 -0.99 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.14 -1.29 5.17 -27.88 -0.14 -1.43 16 5 C 0.51 6.56 7.55 -10.98 -0.08 6.48 16 6 O -0.54 -8.79 13.97 5.56 0.08 -8.71 16 7 N -0.72 -9.19 5.55 -61.47 -0.34 -9.53 16 8 C 0.17 2.44 5.80 -5.19 -0.03 2.41 16 9 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 10 C -0.20 -3.17 9.70 -39.53 -0.38 -3.55 16 11 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 12 C -0.23 -4.69 9.17 -39.40 -0.36 -5.05 16 13 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 14 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 15 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 16 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 19 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 27 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 4.52 8.46 -40.82 -0.35 4.18 16 34 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -30.82 337.32 -7.23 -38.05 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.84 Total: 6.69 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.95 Total: -17.69 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.42 Total: -33.59 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.82 -7.23 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.722 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds