Wall clock time and date at job start Mon Mar 30 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47604 * 120.00161 * 2 1 3 5 5 C 1.50700 * 109.46849 * 64.99781 * 4 2 1 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99813 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47176 * 299.99747 * 1 2 3 25 25 H 1.09001 * 109.47353 * 59.99812 * 1 2 3 26 26 H 1.09000 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47176 * 240.00253 * 2 1 3 28 28 H 1.08997 * 109.47430 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47233 * 300.00261 * 3 2 1 30 30 H 1.08998 * 109.46962 * 60.00122 * 3 2 1 31 31 H 1.09008 * 109.46644 * 305.00198 * 4 2 1 32 32 H 1.08998 * 109.47635 * 185.00394 * 4 2 1 33 33 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 35 35 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1887 6 8 1.0117 -2.5903 0.2399 7 7 1.9846 -3.0085 2.1893 8 6 1.5975 -4.4203 2.1304 9 6 2.0988 -5.1304 3.3615 10 6 3.3531 -5.7136 3.3600 11 6 3.8164 -6.3666 4.4875 12 6 3.0300 -6.4326 5.6211 13 6 1.7682 -5.8531 5.6238 14 8 0.9906 -5.9215 6.7344 15 6 1.4505 -6.6683 7.7585 16 1 2.4337 -7.1118 7.7046 17 6 0.6610 -6.8668 8.8809 18 7 -0.5369 -6.3270 8.9465 19 14 1.2978 -7.9021 10.2995 20 1 2.6629 -8.3923 9.9807 21 1 1.3444 -7.0764 11.5329 22 1 0.3928 -9.0600 10.5127 23 6 1.3054 -5.1985 4.4895 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2951 33 1 2.4879 -2.6749 2.9485 34 1 2.0329 -4.8795 1.2429 35 1 0.5113 -4.4975 2.0838 36 1 3.9718 -5.6589 2.4765 37 1 4.7959 -6.8213 4.4831 38 1 3.3945 -6.9383 6.5031 39 1 -1.0893 -6.4663 9.7315 40 1 0.3259 -4.7435 4.4897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113105222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:41 Heat of formation + Delta-G solvation = -81.196298 kcal Electronic energy + Delta-G solvation = -20488.394122 eV Core-core repulsion = 17267.254845 eV Total energy + Delta-G solvation = -3221.139277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10305 -40.59457 -38.52650 -36.62325 -35.61776 -34.29323 -32.36784 -30.84363 -29.33042 -27.92809 -27.47146 -26.40950 -23.28058 -22.53806 -21.90047 -20.77978 -19.60341 -18.90217 -17.93709 -17.07641 -16.79090 -16.69113 -16.22428 -16.09482 -15.66958 -15.49433 -14.94622 -14.78126 -14.69114 -14.30196 -13.94795 -13.76204 -13.45839 -13.19948 -13.03181 -12.97588 -12.69278 -12.56548 -12.36940 -12.28639 -12.08959 -12.03787 -11.72370 -11.55139 -11.22162 -10.86120 -10.76377 -10.07086 -9.75302 -9.04218 -8.47790 -6.16368 0.38212 0.69550 1.35690 1.43508 1.53760 1.69613 2.16828 2.32027 2.85851 3.15285 3.39804 3.77251 3.84735 3.97461 4.05312 4.09188 4.29719 4.39864 4.40754 4.52187 4.67226 4.72094 4.73674 4.74766 4.77645 4.87585 5.01055 5.07061 5.11436 5.13524 5.24766 5.32063 5.37592 5.52134 5.55513 5.61724 5.69813 5.71059 6.01106 6.15804 6.59263 6.97176 7.28977 7.77322 8.75567 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.003055 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.874963 B = 9163.384136 C = 9692.093016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.133 4.133 5 C 0.507 3.493 6 O -0.580 6.580 7 N -0.718 5.718 8 C 0.173 3.827 9 C -0.058 4.058 10 C -0.169 4.169 11 C -0.069 4.069 12 C -0.235 4.235 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.250 1.250 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.182 4.182 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.412 0.588 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 9.947 -13.220 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.200 4.200 4 C -0.172 4.172 5 C 0.296 3.704 6 O -0.460 6.460 7 N -0.370 5.370 8 C 0.050 3.950 9 C -0.059 4.059 10 C -0.188 4.188 11 C -0.087 4.087 12 C -0.255 4.255 13 C 0.063 3.937 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.173 1.173 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.202 4.202 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.248 0.752 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.178 9.764 -13.712 19.173 hybrid contribution -0.189 -0.546 1.307 1.429 sum 8.988 9.219 -12.405 17.879 Atomic orbital electron populations 1.21943 0.95842 1.01700 1.01630 1.20849 0.95761 0.96598 0.96724 1.21819 1.01545 0.94154 1.02458 1.21852 1.04550 0.89358 1.01452 1.21386 0.78222 0.89561 0.81253 1.90649 1.41574 1.78917 1.34842 1.46126 1.57742 1.08961 1.24197 1.19993 0.99342 0.80937 0.94747 1.19464 0.94567 0.98731 0.93114 1.20993 0.95844 1.02429 0.99516 1.21165 0.99409 0.96635 0.91456 1.21378 0.95289 1.07583 1.01213 1.19850 0.91249 0.94945 0.87682 1.83948 1.45063 1.63330 1.21600 1.21866 1.02910 1.29475 0.94548 0.87885 1.26588 0.95338 0.98911 1.01252 1.70188 1.10592 1.44428 1.30724 0.84528 0.78885 0.77036 0.75760 1.17281 1.19377 1.19566 1.20214 1.01267 1.06637 0.92111 0.92614 0.92476 0.93560 0.91950 0.91502 0.92203 0.91927 0.87364 0.86316 0.75188 0.89745 0.92306 0.83428 0.83303 0.86156 0.91870 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.93 71.98 0.64 -2.46 16 2 C -0.08 -1.38 2.57 -10.80 -0.03 -1.41 16 3 C -0.14 -1.70 9.19 71.98 0.66 -1.04 16 4 C -0.13 -2.12 5.17 29.85 0.15 -1.96 16 5 C 0.51 12.19 7.55 87.66 0.66 12.85 16 6 O -0.58 -18.37 13.97 -3.01 -0.04 -18.41 16 7 N -0.72 -16.72 5.55 -466.79 -2.59 -19.31 16 8 C 0.17 4.73 5.80 85.63 0.50 5.22 16 9 C -0.06 -1.83 5.25 -19.88 -0.10 -1.93 16 10 C -0.17 -4.74 9.70 22.30 0.22 -4.52 16 11 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 12 C -0.24 -9.62 9.17 22.39 0.21 -9.41 16 13 C 0.11 5.40 6.65 22.58 0.15 5.55 16 14 O -0.23 -13.71 9.76 -22.74 -0.22 -13.93 16 15 C -0.41 -23.46 9.49 67.92 0.64 -22.81 16 16 H 0.10 5.34 5.21 -2.91 -0.02 5.33 16 17 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 18 N -0.92 -56.06 13.67 21.61 0.30 -55.76 16 19 Si 1.02 42.09 29.55 68.60 2.03 44.11 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.18 -7.45 9.65 22.39 0.22 -7.24 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.21 5.95 -2.39 -0.01 1.20 16 27 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 8.15 8.46 -92.71 -0.78 7.37 16 34 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 35 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -72.23 337.32 4.33 -67.90 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.26 Total: 27.32 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.61 Total: -31.92 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.29 Total: -75.07 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.26 Total: -32.34 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -72.23 4.33 -67.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.301 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds