Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47198 * 2 1 4 4 H 1.09011 * 109.46669 * 304.99846 * 3 2 1 5 5 C 1.53000 * 109.47503 * 64.99637 * 3 2 1 6 6 C 1.50700 * 109.47454 * 185.00028 * 3 2 1 7 7 O 1.21278 * 119.99504 * 359.97438 * 6 3 2 8 8 N 1.34779 * 120.00144 * 179.97438 * 6 3 2 9 9 C 1.46494 * 119.99708 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.46905 * 180.02562 * 9 8 6 11 11 C 1.38326 * 119.96036 * 269.71965 * 10 9 8 12 12 C 1.38280 * 120.13593 * 180.27023 * 11 10 9 13 13 C 1.38125 * 120.06813 * 0.02562 * 12 11 10 14 14 C 1.38857 * 119.92941 * 359.97438 * 13 12 11 15 15 O 1.35759 * 120.06714 * 179.97438 * 14 13 12 16 16 C 1.34831 * 116.99718 * 354.48542 * 15 14 13 17 17 H 1.07998 * 120.00057 * 5.06548 * 16 15 14 18 18 C 1.38654 * 119.99581 * 185.05723 * 16 15 14 19 19 N 1.31561 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46696 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46827 * 119.99911 * 20 18 16 23 23 H 1.48499 * 109.47147 * 240.00412 * 20 18 16 24 24 C 1.38074 * 119.96544 * 89.99914 * 10 9 8 25 25 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47513 * 300.00344 * 1 2 3 27 27 H 1.08997 * 109.46956 * 60.00924 * 1 2 3 28 28 H 1.08996 * 109.47513 * 239.99656 * 2 1 3 29 29 H 1.09003 * 109.47112 * 119.99980 * 2 1 3 30 30 H 1.08997 * 109.47507 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46925 * 300.00505 * 5 3 2 32 32 H 1.09001 * 109.46948 * 59.99863 * 5 3 2 33 33 H 0.96996 * 119.99770 * 359.97438 * 8 6 3 34 34 H 1.08996 * 109.47638 * 60.00041 * 9 8 6 35 35 H 1.08994 * 109.47133 * 299.99741 * 9 8 6 36 36 H 1.07995 * 119.93590 * 0.26096 * 11 10 9 37 37 H 1.07998 * 119.96668 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.03457 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99759 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.03806 * 359.69747 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2037 8 7 4.2149 2.6119 -0.1458 9 6 5.6749 2.6136 -0.2656 10 6 6.1772 4.0344 -0.2658 11 6 6.3150 4.7183 -1.4602 12 6 6.7809 6.0203 -1.4650 13 6 7.1107 6.6417 -0.2763 14 6 6.9735 5.9577 0.9243 15 8 7.2973 6.5656 2.0942 16 6 7.8532 7.7913 2.0137 17 1 7.9471 8.2798 1.0551 18 6 8.3042 8.4247 3.1617 19 7 8.1902 7.8295 4.3295 20 14 9.0739 10.1232 3.0504 21 1 9.0843 10.5699 1.6342 22 1 8.2820 11.0797 3.8649 23 1 10.4664 10.0703 3.5636 24 6 6.5049 4.6502 0.9259 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9982 3.1544 1.3071 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5876 2.1491 33 1 3.7324 3.4509 -0.0823 34 1 5.9637 2.1257 -1.1965 35 1 6.1092 2.0752 0.5767 36 1 6.0583 4.2345 -2.3910 37 1 6.8870 6.5518 -2.3991 38 1 7.4749 7.6584 -0.2807 39 1 8.5054 8.2728 5.1326 40 1 6.3968 4.1158 1.8581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113109389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = -62.047853 kcal Electronic energy + Delta-G solvation = -20625.702680 eV Core-core repulsion = 17405.393742 eV Total energy + Delta-G solvation = -3220.308938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97746 -39.07377 -36.89154 -35.54184 -34.51004 -32.35648 -31.06349 -29.75493 -29.06252 -26.20588 -25.41123 -24.85416 -21.89270 -21.65517 -20.81795 -19.79636 -17.92593 -17.28883 -16.72369 -15.94876 -15.66006 -15.20478 -14.84122 -14.52700 -14.35629 -14.03327 -13.66818 -13.62569 -13.55142 -12.90735 -12.67383 -12.42374 -12.31991 -12.17667 -11.81794 -11.75045 -11.65303 -11.40505 -11.01846 -10.94552 -10.85652 -10.82814 -10.71252 -10.47924 -9.72997 -9.42699 -8.96482 -8.91323 -8.25927 -7.35159 -6.51231 -4.10785 1.88757 2.24611 2.70067 3.07692 3.09827 3.15340 3.39677 3.90729 4.46142 4.56940 4.69130 4.76088 4.92060 5.04961 5.14295 5.19225 5.26397 5.30263 5.41753 5.52181 5.63710 5.71307 5.73174 5.80201 5.82689 5.87211 5.94289 6.05784 6.09281 6.18087 6.23182 6.50602 6.53647 6.79502 6.97621 7.16793 7.25168 7.33515 7.59129 7.69682 7.93013 8.28652 8.94262 9.62735 10.66582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.003219 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.761009 B = 8696.220168 C = 9243.369401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.147 4.147 6 C 0.514 3.486 7 O -0.547 6.547 8 N -0.720 5.720 9 C 0.167 3.833 10 C -0.073 4.073 11 C -0.196 4.196 12 C -0.076 4.076 13 C -0.226 4.226 14 C 0.151 3.849 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.171 4.171 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 -7.859 -8.710 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.114 0.886 5 C -0.205 4.205 6 C 0.300 3.700 7 O -0.425 6.425 8 N -0.372 5.372 9 C 0.044 3.956 10 C -0.073 4.073 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.246 4.246 14 C 0.097 3.903 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.191 4.191 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.106 -8.633 -8.271 16.318 hybrid contribution 0.293 1.451 -0.080 1.482 sum -10.812 -7.183 -8.350 15.434 Atomic orbital electron populations 1.21849 0.95602 1.01774 1.01875 1.21332 0.95197 0.94306 1.03447 1.21356 0.91971 0.99299 1.00613 0.88634 1.21846 1.02214 1.00582 0.95840 1.20702 0.89944 0.83575 0.75786 1.90680 1.70420 1.31483 1.49883 1.46168 1.07808 1.08800 1.74374 1.20149 0.79423 0.93751 1.02272 1.19277 1.00685 0.94217 0.93155 1.20478 1.08871 0.95742 0.96416 1.20747 0.97249 0.94484 0.96930 1.21246 1.09280 1.01788 0.92253 1.19323 0.92827 0.91536 0.86631 1.83985 1.68188 1.31113 1.24695 1.21374 1.39100 0.90807 0.95638 0.88979 1.25303 0.96933 0.99994 0.94256 1.70047 1.43437 1.37871 0.98180 0.85642 0.78769 0.80146 0.78835 1.19088 1.20104 1.20082 1.20083 1.07944 0.93518 0.97552 0.92575 0.92390 0.92762 0.91229 0.91323 0.91873 0.91257 0.91954 0.76252 0.91031 0.90933 0.87530 0.87282 0.85447 0.91986 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.10 -1.01 4.75 -26.73 -0.13 -1.14 16 3 C -0.11 -1.08 2.72 -91.77 -0.25 -1.33 16 4 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 5 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 6 C 0.51 6.87 7.15 -10.98 -0.08 6.80 16 7 O -0.55 -9.31 15.92 5.56 0.09 -9.22 16 8 N -0.72 -9.37 5.44 -61.48 -0.33 -9.70 16 9 C 0.17 2.47 5.80 -5.20 -0.03 2.44 16 10 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 11 C -0.20 -3.18 9.70 -39.53 -0.38 -3.56 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 13 C -0.23 -4.69 9.17 -39.39 -0.36 -5.05 16 14 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 15 O -0.18 -4.90 9.76 0.02 0.00 -4.90 16 16 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.17 -3.44 9.64 -39.40 -0.38 -3.82 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.55 7.57 -51.93 -0.39 0.15 16 31 H 0.07 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.65 7.88 -40.82 -0.32 4.33 16 34 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 336.77 15.07 5.07 5.07 Total: -1.00 -31.09 336.77 -7.10 -38.20 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.74 Total: 6.64 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.93 Total: -17.09 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.42 Total: -33.76 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.09 -7.10 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113109389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.852 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds