Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47198 * 2 1 4 4 H 1.09011 * 109.46669 * 304.99846 * 3 2 1 5 5 C 1.53000 * 109.47503 * 64.99637 * 3 2 1 6 6 C 1.50700 * 109.47454 * 185.00028 * 3 2 1 7 7 O 1.21278 * 119.99504 * 359.97438 * 6 3 2 8 8 N 1.34779 * 120.00144 * 179.97438 * 6 3 2 9 9 C 1.46494 * 119.99708 * 179.97438 * 8 6 3 10 10 C 1.50703 * 109.46905 * 180.02562 * 9 8 6 11 11 C 1.38326 * 119.96036 * 269.71965 * 10 9 8 12 12 C 1.38280 * 120.13593 * 180.27023 * 11 10 9 13 13 C 1.38125 * 120.06813 * 0.02562 * 12 11 10 14 14 C 1.38857 * 119.92941 * 359.97438 * 13 12 11 15 15 O 1.35759 * 120.06714 * 179.97438 * 14 13 12 16 16 C 1.34831 * 116.99718 * 354.48542 * 15 14 13 17 17 H 1.07998 * 120.00057 * 5.06548 * 16 15 14 18 18 C 1.38654 * 119.99581 * 185.05723 * 16 15 14 19 19 N 1.31561 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46696 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46827 * 119.99911 * 20 18 16 23 23 H 1.48499 * 109.47147 * 240.00412 * 20 18 16 24 24 C 1.38074 * 119.96544 * 89.99914 * 10 9 8 25 25 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47513 * 300.00344 * 1 2 3 27 27 H 1.08997 * 109.46956 * 60.00924 * 1 2 3 28 28 H 1.08996 * 109.47513 * 239.99656 * 2 1 3 29 29 H 1.09003 * 109.47112 * 119.99980 * 2 1 3 30 30 H 1.08997 * 109.47507 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46925 * 300.00505 * 5 3 2 32 32 H 1.09001 * 109.46948 * 59.99863 * 5 3 2 33 33 H 0.96996 * 119.99770 * 359.97438 * 8 6 3 34 34 H 1.08996 * 109.47638 * 60.00041 * 9 8 6 35 35 H 1.08994 * 109.47133 * 299.99741 * 9 8 6 36 36 H 1.07995 * 119.93590 * 0.26096 * 11 10 9 37 37 H 1.07998 * 119.96668 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.03457 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99759 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.03806 * 359.69747 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2037 8 7 4.2149 2.6119 -0.1458 9 6 5.6749 2.6136 -0.2656 10 6 6.1772 4.0344 -0.2658 11 6 6.3150 4.7183 -1.4602 12 6 6.7809 6.0203 -1.4650 13 6 7.1107 6.6417 -0.2763 14 6 6.9735 5.9577 0.9243 15 8 7.2973 6.5656 2.0942 16 6 7.8532 7.7913 2.0137 17 1 7.9471 8.2798 1.0551 18 6 8.3042 8.4247 3.1617 19 7 8.1902 7.8295 4.3295 20 14 9.0739 10.1232 3.0504 21 1 9.0843 10.5699 1.6342 22 1 8.2820 11.0797 3.8649 23 1 10.4664 10.0703 3.5636 24 6 6.5049 4.6502 0.9259 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9982 3.1544 1.3071 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5876 2.1491 33 1 3.7324 3.4509 -0.0823 34 1 5.9637 2.1257 -1.1965 35 1 6.1092 2.0752 0.5767 36 1 6.0583 4.2345 -2.3910 37 1 6.8870 6.5518 -2.3991 38 1 7.4749 7.6584 -0.2807 39 1 8.5054 8.2728 5.1326 40 1 6.3968 4.1158 1.8581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113109389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -81.731834 kcal Electronic energy + Delta-G solvation = -20626.556241 eV Core-core repulsion = 17405.393742 eV Total energy + Delta-G solvation = -3221.162500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17211 -40.63934 -38.51826 -36.41226 -35.78466 -34.29139 -32.37375 -30.92754 -30.35068 -27.64460 -26.97324 -25.87354 -23.29928 -22.83235 -22.28131 -20.79781 -19.58915 -18.91155 -17.97020 -17.10206 -16.85402 -16.62224 -16.30679 -16.08930 -15.58066 -15.45802 -15.11015 -14.91880 -14.43023 -14.32094 -13.97365 -13.79037 -13.56645 -13.27901 -13.06495 -12.94570 -12.58768 -12.53304 -12.51226 -12.36376 -12.28612 -12.08890 -11.70020 -11.57294 -11.22317 -10.87754 -10.78596 -10.12543 -9.76015 -9.04456 -8.47725 -6.16322 0.37536 0.69310 1.35743 1.43538 1.53800 1.63387 2.16810 2.27555 2.85135 3.14729 3.39241 3.70501 3.80924 3.90698 4.00219 4.08351 4.29265 4.39272 4.41904 4.51751 4.53274 4.61784 4.67629 4.71600 4.75643 4.96648 5.00492 5.04562 5.11390 5.13367 5.22307 5.24390 5.35073 5.40722 5.52300 5.61317 5.69485 5.70665 6.01090 6.15349 6.54229 6.97232 7.22290 7.77263 8.75586 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.003219 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.761009 B = 8696.220168 C = 9243.369401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.103 4.103 4 H 0.122 0.878 5 C -0.146 4.146 6 C 0.511 3.489 7 O -0.587 6.587 8 N -0.714 5.714 9 C 0.172 3.828 10 C -0.058 4.058 11 C -0.169 4.169 12 C -0.069 4.069 13 C -0.235 4.235 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.182 4.182 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.412 0.588 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 -7.506 -11.795 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.124 4.124 4 H 0.140 0.860 5 C -0.203 4.203 6 C 0.299 3.701 7 O -0.467 6.467 8 N -0.366 5.366 9 C 0.049 3.951 10 C -0.059 4.059 11 C -0.188 4.188 12 C -0.086 4.086 13 C -0.254 4.254 14 C 0.063 3.937 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.196 1.196 24 C -0.202 4.202 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.248 0.752 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.544 -8.290 -11.410 18.875 hybrid contribution 0.617 1.086 0.630 1.399 sum -11.926 -7.205 -10.780 17.617 Atomic orbital electron populations 1.21815 0.93435 1.02459 1.02845 1.21318 0.97001 0.93899 1.02024 1.21404 0.89063 0.99877 1.02102 0.86035 1.21859 1.03627 1.00178 0.94640 1.21387 0.91436 0.82754 0.74503 1.90666 1.71522 1.32833 1.51677 1.46084 1.07003 1.09394 1.74096 1.20023 0.80568 0.92046 1.02484 1.19445 0.99268 0.94929 0.92262 1.20992 1.05301 0.95035 0.97450 1.21166 0.95525 0.94922 0.97026 1.21381 1.09562 1.01718 0.92750 1.19844 0.94320 0.92821 0.86710 1.83952 1.70858 1.31942 1.27159 1.21866 1.39266 0.91216 0.96438 0.87872 1.26588 0.97367 1.04526 0.93598 1.70194 1.46220 1.40336 0.99176 0.84530 0.77623 0.74397 0.79672 1.17272 1.19382 1.19577 1.20206 1.08484 0.92807 0.98676 0.92161 0.91549 0.91571 0.92509 0.93024 0.91730 0.88993 0.93394 0.75169 0.89662 0.92254 0.83431 0.83277 0.86123 0.91876 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.10 -1.87 4.75 30.59 0.15 -1.72 16 3 C -0.10 -1.80 2.72 -11.54 -0.03 -1.83 16 4 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 5 C -0.15 -2.26 8.84 71.98 0.64 -1.63 16 6 C 0.51 12.95 7.15 87.66 0.63 13.57 16 7 O -0.59 -19.66 15.92 -3.02 -0.05 -19.71 16 8 N -0.71 -17.18 5.44 -466.81 -2.54 -19.72 16 9 C 0.17 4.77 5.80 85.64 0.50 5.27 16 10 C -0.06 -1.85 5.25 -19.88 -0.10 -1.95 16 11 C -0.17 -4.75 9.70 22.30 0.22 -4.53 16 12 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 13 C -0.23 -9.58 9.17 22.39 0.21 -9.38 16 14 C 0.11 5.41 6.65 22.58 0.15 5.56 16 15 O -0.23 -13.67 9.76 -22.85 -0.22 -13.90 16 16 C -0.41 -23.42 9.49 67.92 0.64 -22.78 16 17 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 19 N -0.92 -56.01 13.67 21.61 0.30 -55.71 16 20 Si 1.02 42.05 29.55 68.60 2.03 44.07 16 21 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 C -0.18 -7.44 9.64 22.39 0.22 -7.22 16 25 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.07 0.70 6.56 -2.39 -0.02 0.68 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 1.15 7.95 -2.39 -0.02 1.14 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.99 7.57 -2.39 -0.02 0.97 16 31 H 0.09 1.03 6.57 -2.38 -0.02 1.02 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.41 8.50 7.88 -92.71 -0.73 7.77 16 34 H 0.09 2.19 8.08 -2.39 -0.02 2.18 16 35 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 36 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.03 5.64 -2.91 -0.02 5.01 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -72.56 336.77 4.41 -68.15 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.31 Total: 27.28 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.59 Total: -30.47 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.24 Total: -75.43 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.27 Total: -33.60 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.56 4.41 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113109389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.582 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds