Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46835 * 2 1 4 4 H 1.08999 * 109.47080 * 54.99925 * 3 2 1 5 5 C 1.52998 * 109.46848 * 294.99202 * 3 2 1 6 6 C 1.50705 * 109.46767 * 174.99739 * 3 2 1 7 7 O 1.21275 * 120.00373 * 359.97438 * 6 3 2 8 8 N 1.34776 * 119.99748 * 179.97438 * 6 3 2 9 9 C 1.46496 * 120.00107 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47230 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96818 * 269.72660 * 10 9 8 12 12 C 1.38280 * 120.13926 * 179.76472 * 11 10 9 13 13 C 1.38123 * 120.06828 * 0.50973 * 12 11 10 14 14 C 1.38852 * 119.93014 * 359.74680 * 13 12 11 15 15 O 1.35754 * 120.06831 * 179.97438 * 14 13 12 16 16 C 1.34825 * 116.99889 * 354.48806 * 15 14 13 17 17 H 1.08000 * 120.00304 * 5.06163 * 16 15 14 18 18 C 1.38653 * 119.99846 * 185.05639 * 16 15 14 19 19 N 1.31561 * 120.00464 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00128 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46733 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47080 * 119.99808 * 20 18 16 23 23 H 1.48500 * 109.47299 * 240.00414 * 20 18 16 24 24 C 1.38085 * 119.96685 * 90.00043 * 10 9 8 25 25 H 1.08998 * 109.46845 * 60.00778 * 1 2 3 26 26 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47562 * 300.00327 * 1 2 3 28 28 H 1.09000 * 109.47562 * 239.99673 * 2 1 3 29 29 H 1.09007 * 109.46927 * 119.99393 * 2 1 3 30 30 H 1.09002 * 109.46581 * 60.00526 * 5 3 2 31 31 H 1.08993 * 109.47085 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47340 * 300.00790 * 5 3 2 33 33 H 0.97006 * 120.00069 * 0.02562 * 8 6 3 34 34 H 1.09005 * 109.47036 * 300.00109 * 9 8 6 35 35 H 1.09000 * 109.47147 * 60.00118 * 9 8 6 36 36 H 1.07998 * 119.92620 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.96346 * 180.25175 * 12 11 10 38 38 H 1.07997 * 120.03238 * 179.72282 * 13 12 11 39 39 H 0.96994 * 120.00500 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03496 * 359.95645 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4444 0.1239 7 8 4.1449 0.3953 0.2048 8 7 4.2149 2.6119 0.1449 9 6 5.6748 2.6137 0.2659 10 6 6.1771 4.0345 0.2657 11 6 6.5118 4.6490 -0.9275 12 6 6.9684 5.9542 -0.9322 13 6 7.1017 6.6450 0.2564 14 6 6.7717 6.0292 1.4564 15 8 6.9021 6.7054 2.6263 16 6 7.4642 7.9294 2.5664 17 1 7.7123 8.3635 1.6091 18 6 7.7237 8.6309 3.7339 19 7 7.4210 8.1025 4.9001 20 14 8.5019 10.3272 3.6510 21 1 8.7417 10.6929 2.2318 22 1 7.5891 11.3213 4.2704 23 1 9.7929 10.3159 4.3847 24 6 6.3082 4.7199 1.4573 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.5489 2.1251 -1.3970 31 1 1.9989 3.1540 -1.3077 32 1 2.0699 1.5874 -2.1492 33 1 3.7325 3.4510 0.0806 34 1 5.9628 2.1270 1.1977 35 1 6.1098 2.0742 -0.5754 36 1 6.4122 4.1096 -1.8578 37 1 7.2250 6.4326 -1.8659 38 1 7.4627 7.6629 0.2525 39 1 7.6028 8.5931 5.7168 40 1 6.0503 4.2384 2.3890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113109391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = -62.024051 kcal Electronic energy + Delta-G solvation = -20602.967825 eV Core-core repulsion = 17382.659919 eV Total energy + Delta-G solvation = -3220.307906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98004 -39.07474 -36.89224 -35.55001 -34.51044 -32.35638 -31.06752 -29.76091 -29.07036 -26.21326 -25.42409 -24.85626 -21.88587 -21.66575 -20.81657 -19.80003 -17.93108 -17.27211 -16.74833 -15.94948 -15.67094 -15.19206 -14.87489 -14.47412 -14.30950 -14.15462 -13.72358 -13.62849 -13.43019 -13.00363 -12.63415 -12.43645 -12.34786 -12.17958 -11.84486 -11.73646 -11.66604 -11.40510 -11.02636 -10.94881 -10.86176 -10.82694 -10.71358 -10.47917 -9.73367 -9.42688 -8.96495 -8.91278 -8.25923 -7.35148 -6.51159 -4.10752 1.88705 2.24626 2.70163 3.07724 3.09848 3.15368 3.39421 3.90759 4.46052 4.55987 4.68489 4.74583 4.91924 5.04926 5.12793 5.19536 5.26308 5.29078 5.38483 5.52797 5.62114 5.69080 5.73226 5.75571 5.82603 5.86966 5.94123 6.05770 6.06763 6.17600 6.23200 6.50553 6.53651 6.79504 6.97610 7.16784 7.25152 7.33541 7.59067 7.69683 7.93041 8.28590 8.94291 9.62810 10.66662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.003147 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.478627 B = 8895.771691 C = 9288.650947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.514 3.486 7 O -0.547 6.547 8 N -0.720 5.720 9 C 0.167 3.833 10 C -0.073 4.073 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.226 4.226 14 C 0.151 3.849 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.171 4.171 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 -8.436 -10.834 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.115 0.885 5 C -0.203 4.203 6 C 0.300 3.700 7 O -0.425 6.425 8 N -0.371 5.371 9 C 0.044 3.956 10 C -0.073 4.073 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.246 4.246 14 C 0.097 3.903 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.191 4.191 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.569 -9.181 -10.279 16.778 hybrid contribution 0.300 1.448 -0.055 1.480 sum -9.268 -7.734 -10.333 15.890 Atomic orbital electron populations 1.21849 0.95595 1.01782 1.01890 1.21332 0.95206 0.94282 1.03439 1.21367 0.92024 0.99344 1.00635 0.88461 1.21828 1.02224 1.00424 0.95827 1.20692 0.89919 0.83576 0.75797 1.90679 1.70402 1.31503 1.49877 1.46169 1.07823 1.08800 1.74355 1.20147 0.79401 0.93729 1.02320 1.19278 1.00731 0.94175 0.93152 1.20476 1.08614 0.95990 0.96405 1.20747 0.97589 0.94148 0.96932 1.21243 1.09330 1.01793 0.92197 1.19320 0.93050 0.91172 0.86773 1.83983 1.69015 1.29449 1.25536 1.21373 1.40213 0.90608 0.94724 0.88978 1.25303 0.97072 0.99972 0.94139 1.70044 1.44069 1.37894 0.97533 0.85641 0.78734 0.80163 0.78851 1.19088 1.20106 1.20082 1.20089 1.08391 0.93055 0.97585 0.92465 0.92570 0.92669 0.91411 0.91141 0.91256 0.91986 0.92122 0.76251 0.90934 0.91032 0.87532 0.87283 0.85448 0.91981 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.10 -1.01 4.75 -26.73 -0.13 -1.13 16 3 C -0.11 -1.10 2.73 -91.77 -0.25 -1.35 16 4 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 5 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 6 C 0.51 6.88 7.15 -10.98 -0.08 6.80 16 7 O -0.55 -9.31 15.92 5.56 0.09 -9.22 16 8 N -0.72 -9.37 5.44 -61.47 -0.33 -9.71 16 9 C 0.17 2.47 5.80 -5.20 -0.03 2.44 16 10 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 11 C -0.20 -3.17 9.70 -39.53 -0.38 -3.55 16 12 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 13 C -0.23 -4.69 9.17 -39.40 -0.36 -5.05 16 14 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 15 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 16 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 20 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 25 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.77 7.96 -51.92 -0.41 0.36 16 30 H 0.07 0.45 6.56 -51.93 -0.34 0.11 16 31 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 4.65 7.88 -40.82 -0.32 4.33 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -31.13 336.76 -7.10 -38.23 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.74 Total: 6.50 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.93 Total: -16.97 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.42 Total: -33.78 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.13 -7.10 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113109391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.792 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds