Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46835 * 2 1 4 4 H 1.08999 * 109.47080 * 54.99925 * 3 2 1 5 5 C 1.52998 * 109.46848 * 294.99202 * 3 2 1 6 6 C 1.50705 * 109.46767 * 174.99739 * 3 2 1 7 7 O 1.21275 * 120.00373 * 359.97438 * 6 3 2 8 8 N 1.34776 * 119.99748 * 179.97438 * 6 3 2 9 9 C 1.46496 * 120.00107 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47230 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96818 * 269.72660 * 10 9 8 12 12 C 1.38280 * 120.13926 * 179.76472 * 11 10 9 13 13 C 1.38123 * 120.06828 * 0.50973 * 12 11 10 14 14 C 1.38852 * 119.93014 * 359.74680 * 13 12 11 15 15 O 1.35754 * 120.06831 * 179.97438 * 14 13 12 16 16 C 1.34825 * 116.99889 * 354.48806 * 15 14 13 17 17 H 1.08000 * 120.00304 * 5.06163 * 16 15 14 18 18 C 1.38653 * 119.99846 * 185.05639 * 16 15 14 19 19 N 1.31561 * 120.00464 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00128 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46733 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47080 * 119.99808 * 20 18 16 23 23 H 1.48500 * 109.47299 * 240.00414 * 20 18 16 24 24 C 1.38085 * 119.96685 * 90.00043 * 10 9 8 25 25 H 1.08998 * 109.46845 * 60.00778 * 1 2 3 26 26 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47562 * 300.00327 * 1 2 3 28 28 H 1.09000 * 109.47562 * 239.99673 * 2 1 3 29 29 H 1.09007 * 109.46927 * 119.99393 * 2 1 3 30 30 H 1.09002 * 109.46581 * 60.00526 * 5 3 2 31 31 H 1.08993 * 109.47085 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47340 * 300.00790 * 5 3 2 33 33 H 0.97006 * 120.00069 * 0.02562 * 8 6 3 34 34 H 1.09005 * 109.47036 * 300.00109 * 9 8 6 35 35 H 1.09000 * 109.47147 * 60.00118 * 9 8 6 36 36 H 1.07998 * 119.92620 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.96346 * 180.25175 * 12 11 10 38 38 H 1.07997 * 120.03238 * 179.72282 * 13 12 11 39 39 H 0.96994 * 120.00500 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03496 * 359.95645 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4444 0.1239 7 8 4.1449 0.3953 0.2048 8 7 4.2149 2.6119 0.1449 9 6 5.6748 2.6137 0.2659 10 6 6.1771 4.0345 0.2657 11 6 6.5118 4.6490 -0.9275 12 6 6.9684 5.9542 -0.9322 13 6 7.1017 6.6450 0.2564 14 6 6.7717 6.0292 1.4564 15 8 6.9021 6.7054 2.6263 16 6 7.4642 7.9294 2.5664 17 1 7.7123 8.3635 1.6091 18 6 7.7237 8.6309 3.7339 19 7 7.4210 8.1025 4.9001 20 14 8.5019 10.3272 3.6510 21 1 8.7417 10.6929 2.2318 22 1 7.5891 11.3213 4.2704 23 1 9.7929 10.3159 4.3847 24 6 6.3082 4.7199 1.4573 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.5489 2.1251 -1.3970 31 1 1.9989 3.1540 -1.3077 32 1 2.0699 1.5874 -2.1492 33 1 3.7325 3.4510 0.0806 34 1 5.9628 2.1270 1.1977 35 1 6.1098 2.0742 -0.5754 36 1 6.4122 4.1096 -1.8578 37 1 7.2250 6.4326 -1.8659 38 1 7.4627 7.6629 0.2525 39 1 7.6028 8.5931 5.7168 40 1 6.0503 4.2384 2.3890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113109391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = -81.741391 kcal Electronic energy + Delta-G solvation = -20603.822833 eV Core-core repulsion = 17382.659919 eV Total energy + Delta-G solvation = -3221.162914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17250 -40.64023 -38.51879 -36.40855 -35.78446 -34.29195 -32.37528 -30.92174 -30.35056 -27.63955 -26.96981 -25.86336 -23.29761 -22.83739 -22.28024 -20.79822 -19.59321 -18.90017 -17.98393 -17.10485 -16.83733 -16.65709 -16.27146 -16.09371 -15.55099 -15.43993 -15.25909 -14.79682 -14.43127 -14.34032 -13.94576 -13.82290 -13.54850 -13.27184 -13.06385 -12.93571 -12.58966 -12.53053 -12.49289 -12.36314 -12.28550 -12.08888 -11.69441 -11.57568 -11.22330 -10.87710 -10.78672 -10.12508 -9.76046 -9.04467 -8.47733 -6.16370 0.37489 0.69328 1.35739 1.43539 1.53805 1.63714 2.16805 2.27246 2.85138 3.14790 3.39134 3.70545 3.81028 3.91544 4.00813 4.08370 4.29346 4.39085 4.41933 4.51757 4.54788 4.61752 4.67797 4.71898 4.77239 4.99168 5.00441 5.05699 5.11350 5.13351 5.22257 5.24359 5.35453 5.40947 5.52258 5.61296 5.69494 5.70686 6.01063 6.15367 6.54125 6.97194 7.22206 7.77281 8.75600 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.003147 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.478627 B = 8895.771691 C = 9288.650947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.107 4.107 4 H 0.112 0.888 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.587 6.587 8 N -0.714 5.714 9 C 0.172 3.828 10 C -0.058 4.058 11 C -0.168 4.168 12 C -0.068 4.068 13 C -0.235 4.235 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.249 1.249 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.182 4.182 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.412 0.588 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 -8.240 -14.093 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.128 4.128 4 H 0.130 0.870 5 C -0.199 4.199 6 C 0.300 3.700 7 O -0.467 6.467 8 N -0.366 5.366 9 C 0.049 3.951 10 C -0.059 4.059 11 C -0.187 4.187 12 C -0.086 4.086 13 C -0.254 4.254 14 C 0.063 3.937 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.196 1.196 24 C -0.202 4.202 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.448 -8.998 -13.599 19.367 hybrid contribution 0.496 1.113 0.711 1.411 sum -9.952 -7.885 -12.888 18.092 Atomic orbital electron populations 1.21817 0.93504 1.02457 1.02804 1.21317 0.96951 0.93916 1.02031 1.21424 0.89067 0.99905 1.02430 0.87047 1.21835 1.03551 1.00301 0.94206 1.21375 0.91396 0.82759 0.74511 1.90665 1.71504 1.32863 1.51674 1.46085 1.07049 1.09381 1.74057 1.20020 0.80662 0.92086 1.02352 1.19446 0.99442 0.94746 0.92262 1.20989 1.04862 0.95455 0.97431 1.21166 0.96059 0.94369 0.97029 1.21379 1.09435 1.01887 0.92698 1.19841 0.94754 0.92310 0.86793 1.83949 1.71664 1.30322 1.27994 1.21866 1.40357 0.91017 0.95544 0.87864 1.26590 0.97551 1.04481 0.93465 1.70190 1.47029 1.40252 0.98472 0.84528 0.77622 0.74381 0.79682 1.17264 1.19390 1.19571 1.20214 1.08846 0.92455 0.98716 0.91086 0.92131 0.92139 0.92342 0.93149 0.89243 0.91356 0.92541 0.75173 0.92221 0.89698 0.83440 0.83269 0.86121 0.91873 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.14 16 2 C -0.10 -1.88 4.75 30.60 0.15 -1.73 16 3 C -0.11 -1.88 2.73 -11.54 -0.03 -1.91 16 4 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 5 C -0.14 -1.81 8.84 71.98 0.64 -1.18 16 6 C 0.51 12.99 7.15 87.66 0.63 13.62 16 7 O -0.59 -19.70 15.92 -3.01 -0.05 -19.74 16 8 N -0.71 -17.20 5.44 -466.80 -2.54 -19.74 16 9 C 0.17 4.77 5.80 85.63 0.50 5.27 16 10 C -0.06 -1.85 5.25 -19.88 -0.10 -1.95 16 11 C -0.17 -4.73 9.70 22.30 0.22 -4.51 16 12 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 13 C -0.23 -9.57 9.17 22.39 0.21 -9.37 16 14 C 0.11 5.41 6.65 22.58 0.15 5.56 16 15 O -0.23 -13.69 9.76 -22.74 -0.22 -13.92 16 16 C -0.41 -23.43 9.49 67.92 0.64 -22.78 16 17 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 19 N -0.92 -56.05 13.67 21.61 0.30 -55.76 16 20 Si 1.02 42.06 29.55 68.60 2.03 44.08 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 24 C -0.18 -7.47 9.65 22.39 0.22 -7.25 16 25 H 0.07 0.69 6.56 -2.39 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.10 7.96 -2.38 -0.02 1.08 16 30 H 0.09 0.82 6.56 -2.39 -0.02 0.80 16 31 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.41 8.51 7.88 -92.70 -0.73 7.78 16 34 H 0.06 1.84 8.08 -2.38 -0.02 1.82 16 35 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 36 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -72.60 336.76 4.41 -68.19 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.31 Total: 26.99 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.59 Total: -30.11 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -2.24 Total: -75.50 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.27 Total: -33.66 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -72.60 4.41 -68.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113109391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.552 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds