Wall clock time and date at job start Mon Mar 30 2020 01:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47129 * 2 1 4 4 C 1.52996 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46849 * 179.97438 * 4 3 2 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99813 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47317 * 300.00252 * 1 2 3 25 25 H 1.09003 * 109.46975 * 59.99968 * 1 2 3 26 26 H 1.08996 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47356 * 240.00243 * 2 1 3 28 28 H 1.08998 * 109.47029 * 119.99566 * 2 1 3 29 29 H 1.09002 * 109.46549 * 59.99915 * 3 2 1 30 30 H 1.08998 * 109.47227 * 300.00354 * 3 2 1 31 31 H 1.09008 * 109.46644 * 60.00251 * 4 3 2 32 32 H 1.08998 * 109.47635 * 300.00447 * 4 3 2 33 33 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 35 35 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2842 3.7852 -0.0004 7 7 5.3974 3.1097 -0.0001 8 6 5.8857 4.4909 -0.0002 9 6 7.3927 4.4910 -0.0009 10 6 8.0842 4.4912 1.1971 11 6 9.4670 4.4918 1.2006 12 6 10.1620 4.4855 0.0070 13 6 9.4708 4.4910 -1.1972 14 8 10.1511 4.4909 -2.3720 15 6 11.4926 4.6073 -2.3025 16 1 11.9850 4.6133 -1.3413 17 6 12.2398 4.7194 -3.4651 18 7 11.6400 4.7126 -4.6358 19 14 14.0983 4.8814 -3.3687 20 1 14.5237 4.8632 -1.9461 21 1 14.7320 3.7478 -4.0889 22 1 14.5168 6.1615 -3.9946 23 6 8.0818 4.4911 -1.1974 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 6.0277 2.3724 -0.0001 34 1 5.5224 5.0047 0.8899 35 1 5.5223 5.0047 -0.8900 36 1 7.5429 4.4910 2.1318 37 1 10.0040 4.4924 2.1376 38 1 11.2420 4.4807 0.0103 39 1 12.1627 4.7913 -5.4491 40 1 7.5413 4.4916 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113110619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:45 Heat of formation + Delta-G solvation = -66.534376 kcal Electronic energy + Delta-G solvation = -20165.302158 eV Core-core repulsion = 16944.798670 eV Total energy + Delta-G solvation = -3220.503489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.79765 -39.03366 -36.87349 -35.56026 -34.45206 -32.36026 -31.30717 -30.26526 -29.12645 -26.30134 -25.30690 -24.11262 -21.74289 -21.34989 -20.82184 -20.25184 -17.90641 -17.22892 -16.64724 -16.17291 -15.76893 -15.26932 -14.96946 -14.51087 -14.42740 -13.95536 -13.85398 -13.63062 -13.53715 -13.13013 -12.65359 -12.52704 -12.41290 -12.12398 -11.70322 -11.49159 -11.45657 -11.37033 -11.20801 -10.97005 -10.83711 -10.78190 -10.71584 -10.48031 -9.83722 -9.42897 -8.97280 -8.91513 -8.26186 -7.35293 -6.51330 -4.10854 1.88679 2.24458 2.70038 3.07645 3.09778 3.15302 3.40120 3.90661 4.46296 4.65956 4.67920 4.73646 4.91080 5.03887 5.06960 5.10142 5.25832 5.30430 5.47098 5.52910 5.60189 5.62622 5.71566 5.73054 5.82689 5.90486 5.93178 6.05269 6.05740 6.17430 6.23055 6.50129 6.53524 6.79396 6.97537 7.16656 7.25033 7.33410 7.58646 7.69549 7.92923 8.28489 8.94147 9.62677 10.66509 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.002811 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.991560 B = 9957.489485 C =10496.541692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.509 3.491 6 O -0.548 6.548 7 N -0.723 5.723 8 C 0.167 3.833 9 C -0.073 4.073 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.150 3.850 14 O -0.176 6.176 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.171 4.171 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 -7.597 9.817 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.182 4.182 5 C 0.296 3.704 6 O -0.426 6.426 7 N -0.374 5.374 8 C 0.044 3.956 9 C -0.073 4.073 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.245 4.245 13 C 0.097 3.903 14 O -0.080 6.080 15 C -0.469 4.469 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.191 4.191 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.913 -6.918 9.318 17.362 hybrid contribution 1.486 -0.229 0.068 1.505 sum -11.428 -7.146 9.385 16.424 Atomic orbital electron populations 1.21760 0.95792 1.01439 1.02003 1.21558 0.96063 0.96711 1.02007 1.21368 0.92821 0.96463 1.03584 1.21710 0.98027 0.94004 1.04444 1.20757 0.82146 0.91717 0.75826 1.90686 1.55368 1.46625 1.49915 1.46194 1.06965 1.09238 1.74996 1.20143 0.90215 0.82800 1.02439 1.19276 0.93214 1.01759 0.93081 1.20479 0.94024 1.10705 0.96305 1.20747 0.93860 0.97892 0.96925 1.21243 1.00753 1.10466 0.92085 1.19326 0.91525 0.92836 0.86658 1.83982 1.21026 1.78274 1.24689 1.21376 0.78469 1.52318 0.94757 0.88970 1.25305 1.00580 0.96446 0.94184 1.70042 1.36311 1.45676 0.97506 0.85638 0.80544 0.78341 0.78848 1.19084 1.20106 1.20086 1.20088 0.91524 1.10030 0.97477 0.92711 0.92657 0.92857 0.91935 0.92023 0.91299 0.91204 0.88850 0.88987 0.76233 0.91042 0.90939 0.87528 0.87277 0.85449 0.91980 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.08 16 3 C -0.10 -0.98 4.50 -26.73 -0.12 -1.10 16 4 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 5 C 0.51 6.67 7.83 -10.98 -0.09 6.59 16 6 O -0.55 -9.24 15.98 5.56 0.09 -9.15 16 7 N -0.72 -9.28 5.55 -61.47 -0.34 -9.62 16 8 C 0.17 2.46 5.80 -5.19 -0.03 2.43 16 9 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 10 C -0.20 -3.17 9.70 -39.53 -0.38 -3.56 16 11 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 12 C -0.23 -4.69 9.17 -39.40 -0.36 -5.05 16 13 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 14 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 15 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 16 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 19 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 4.53 8.46 -40.82 -0.35 4.18 16 34 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -31.28 342.09 -7.64 -38.92 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.96 Total: 6.07 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.32 Total: -17.47 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.42 Total: -33.70 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.28 -7.64 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113110619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.618 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds