Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47129 * 2 1 4 4 C 1.52996 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46849 * 179.97438 * 4 3 2 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99813 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47317 * 300.00252 * 1 2 3 25 25 H 1.09003 * 109.46975 * 59.99968 * 1 2 3 26 26 H 1.08996 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47356 * 240.00243 * 2 1 3 28 28 H 1.08998 * 109.47029 * 119.99566 * 2 1 3 29 29 H 1.09002 * 109.46549 * 59.99915 * 3 2 1 30 30 H 1.08998 * 109.47227 * 300.00354 * 3 2 1 31 31 H 1.09008 * 109.46644 * 60.00251 * 4 3 2 32 32 H 1.08998 * 109.47635 * 300.00447 * 4 3 2 33 33 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 34 34 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 35 35 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2842 3.7852 -0.0004 7 7 5.3974 3.1097 -0.0001 8 6 5.8857 4.4909 -0.0002 9 6 7.3927 4.4910 -0.0009 10 6 8.0842 4.4912 1.1971 11 6 9.4670 4.4918 1.2006 12 6 10.1620 4.4855 0.0070 13 6 9.4708 4.4910 -1.1972 14 8 10.1511 4.4909 -2.3720 15 6 11.4926 4.6073 -2.3025 16 1 11.9850 4.6133 -1.3413 17 6 12.2398 4.7194 -3.4651 18 7 11.6400 4.7126 -4.6358 19 14 14.0983 4.8814 -3.3687 20 1 14.5237 4.8632 -1.9461 21 1 14.7320 3.7478 -4.0889 22 1 14.5168 6.1615 -3.9946 23 6 8.0818 4.4911 -1.1974 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 6.0277 2.3724 -0.0001 34 1 5.5224 5.0047 0.8899 35 1 5.5223 5.0047 -0.8900 36 1 7.5429 4.4910 2.1318 37 1 10.0040 4.4924 2.1376 38 1 11.2420 4.4807 0.0103 39 1 12.1627 4.7913 -5.4491 40 1 7.5413 4.4916 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113110619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -86.178272 kcal Electronic energy + Delta-G solvation = -20166.153982 eV Core-core repulsion = 16944.798670 eV Total energy + Delta-G solvation = -3221.355312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06573 -40.52802 -38.49752 -36.32016 -35.68376 -34.29415 -32.49600 -31.29215 -30.66828 -27.69637 -27.01782 -25.04038 -23.27339 -22.46534 -21.99036 -21.27210 -19.61112 -18.89681 -17.83027 -17.06420 -16.97342 -16.70958 -16.43307 -16.08285 -15.67302 -15.51933 -15.07739 -14.77604 -14.51776 -14.36547 -14.00471 -13.92075 -13.58791 -13.23444 -13.21049 -13.04283 -12.57564 -12.37940 -12.28789 -12.17353 -12.09133 -12.05459 -11.84323 -11.42791 -11.22559 -10.96373 -10.81312 -10.11136 -9.76031 -9.04403 -8.47885 -6.16418 0.37925 0.69348 1.35661 1.43494 1.53771 1.66682 2.16763 2.30242 2.85467 3.14998 3.39483 3.76426 3.87603 3.97177 4.07436 4.09417 4.29455 4.38047 4.40298 4.49877 4.51985 4.65647 4.67529 4.71956 4.83046 4.96482 5.00834 5.02862 5.11366 5.13478 5.24571 5.29713 5.39758 5.41139 5.53112 5.61464 5.69629 5.70849 6.01027 6.15588 6.56923 6.97072 7.25524 7.77251 8.75472 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.002811 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.991560 B = 9957.489485 C =10496.541692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.134 4.134 5 C 0.506 3.494 6 O -0.589 6.589 7 N -0.717 5.717 8 C 0.172 3.828 9 C -0.058 4.058 10 C -0.169 4.169 11 C -0.069 4.069 12 C -0.234 4.234 13 C 0.112 3.888 14 O -0.232 6.232 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.249 1.249 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.182 4.182 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -8.730 12.979 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.174 4.174 5 C 0.295 3.705 6 O -0.470 6.470 7 N -0.369 5.369 8 C 0.049 3.951 9 C -0.059 4.059 10 C -0.188 4.188 11 C -0.087 4.087 12 C -0.254 4.254 13 C 0.062 3.938 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.173 1.173 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.202 4.202 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.250 0.750 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.024 -8.077 12.538 19.800 hybrid contribution 1.230 0.122 -0.660 1.401 sum -11.794 -7.955 11.878 18.533 Atomic orbital electron populations 1.21785 0.95771 1.02055 1.01641 1.21531 0.96102 0.95251 1.02965 1.21339 0.93094 0.97590 1.02069 1.21761 0.97640 0.91398 1.06568 1.21467 0.81578 0.92966 0.74468 1.90674 1.56286 1.48258 1.51786 1.46113 1.07344 1.08668 1.74750 1.20008 0.88498 0.84115 1.02518 1.19450 0.94291 0.99956 0.92166 1.20995 0.93822 1.06555 0.97397 1.21167 0.94491 0.95993 0.97024 1.21374 1.00722 1.10698 0.92588 1.19857 0.92649 0.94587 0.86700 1.83949 1.21432 1.81384 1.27143 1.21869 0.78965 1.52370 0.95570 0.87854 1.26597 1.06098 0.95942 0.93524 1.70189 1.38532 1.48771 0.98455 0.84523 0.73538 0.78429 0.79689 1.17258 1.19382 1.19585 1.20216 0.90676 1.10697 0.98632 0.92908 0.93279 0.91735 0.91241 0.90709 0.92519 0.93154 0.87100 0.86198 0.75048 0.89736 0.92280 0.83419 0.83287 0.86144 0.91871 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.51 5.93 30.60 0.18 -1.33 16 3 C -0.10 -1.78 4.50 30.60 0.14 -1.64 16 4 C -0.13 -2.11 5.70 29.85 0.17 -1.94 16 5 C 0.51 12.37 7.83 87.66 0.69 13.05 16 6 O -0.59 -19.44 15.98 -3.01 -0.05 -19.49 16 7 N -0.72 -16.76 5.55 -466.79 -2.59 -19.35 16 8 C 0.17 4.72 5.80 85.63 0.50 5.22 16 9 C -0.06 -1.83 5.25 -19.88 -0.10 -1.93 16 10 C -0.17 -4.73 9.70 22.30 0.22 -4.51 16 11 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 12 C -0.23 -9.57 9.17 22.39 0.21 -9.36 16 13 C 0.11 5.37 6.65 22.58 0.15 5.52 16 14 O -0.23 -13.68 9.76 -22.74 -0.22 -13.90 16 15 C -0.41 -23.43 9.49 67.92 0.64 -22.78 16 16 H 0.10 5.35 5.21 -2.91 -0.02 5.34 16 17 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 18 N -0.92 -56.07 13.67 21.61 0.30 -55.78 16 19 Si 1.02 42.08 29.55 68.60 2.03 44.11 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 C -0.18 -7.45 9.65 22.39 0.22 -7.23 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 31 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.41 8.10 8.46 -92.71 -0.78 7.32 16 34 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 35 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 40 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -73.05 342.09 4.12 -68.94 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.25 Total: 26.42 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 4.40 Total: -30.96 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.29 Total: -75.13 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.27 Total: -33.38 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -73.05 4.12 -68.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113110619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.241 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds