Wall clock time and date at job start Mon Mar 30 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.52990 * 109.47457 * 240.00149 * 2 1 3 5 5 C 1.50700 * 109.46849 * 119.99736 * 2 1 3 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 2 1 7 7 N 1.34783 * 119.99813 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47635 * 299.99651 * 1 2 3 25 25 H 1.09007 * 109.46996 * 60.00441 * 1 2 3 26 26 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47118 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47346 * 300.00363 * 3 2 1 29 29 H 1.09003 * 109.47032 * 59.99971 * 3 2 1 30 30 H 1.09004 * 109.47581 * 299.99949 * 4 2 1 31 31 H 1.09007 * 109.47499 * 59.99717 * 4 2 1 32 32 H 1.09002 * 109.47490 * 179.97438 * 4 2 1 33 33 H 0.97004 * 119.99718 * 0.02562 * 7 5 2 34 34 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 35 35 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0322 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8331 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3527 -1.5229 2.6407 10 6 6.0446 -2.5600 2.0415 11 6 7.4274 -2.5628 2.0405 12 6 8.1219 -1.5260 2.6326 13 6 7.4303 -0.4864 3.2399 14 8 8.1101 0.5309 3.8279 15 6 9.4516 0.4129 3.8942 16 1 9.9444 -0.4220 3.4184 17 6 10.1983 1.3637 4.5732 18 7 9.5980 2.3804 5.1531 19 14 12.0569 1.1998 4.6657 20 1 12.4828 -0.0226 3.9380 21 1 12.6902 2.3909 4.0448 22 1 12.4750 1.1012 6.0872 23 6 6.0412 -0.4868 3.2398 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 3.9877 -0.4638 0.8059 34 1 3.4828 -2.5519 2.6392 35 1 3.4818 -1.0110 3.5301 36 1 5.5038 -3.3692 1.5734 37 1 7.9649 -3.3740 1.5722 38 1 9.2020 -1.5261 2.6270 39 1 10.1204 3.0453 5.6284 40 1 5.5004 0.3222 3.7081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113110709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:48 Heat of formation + Delta-G solvation = -59.620851 kcal Electronic energy + Delta-G solvation = -20927.169639 eV Core-core repulsion = 17706.965944 eV Total energy + Delta-G solvation = -3220.203696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16262 -39.09813 -36.89858 -35.67696 -34.51373 -32.35471 -30.77393 -29.16528 -27.53897 -27.35191 -26.09841 -25.18835 -22.64727 -21.71860 -20.82860 -19.42426 -17.78953 -17.17323 -16.59574 -15.96168 -15.46929 -15.10205 -14.66887 -14.48275 -14.18775 -13.98687 -13.81786 -13.62042 -13.38797 -12.72920 -12.56013 -12.44787 -12.40559 -12.09608 -12.05498 -11.88300 -11.69008 -11.40231 -11.12620 -11.10925 -10.96481 -10.83048 -10.71152 -10.47863 -9.67881 -9.42680 -8.95792 -8.91270 -8.25847 -7.35125 -6.51197 -4.10754 1.88775 2.24639 2.70396 3.07696 3.09874 3.15369 3.38921 3.90766 4.43868 4.55124 4.62970 4.70350 4.90883 5.04324 5.10388 5.26893 5.36484 5.41529 5.52211 5.53790 5.63205 5.68507 5.73103 5.74406 5.82422 5.87129 5.96876 6.03491 6.05831 6.12688 6.23242 6.51046 6.53724 6.79553 6.97671 7.16883 7.25186 7.33536 7.59468 7.69751 7.93007 8.28958 8.94280 9.62794 10.66610 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.003450 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.563240 B = 8115.113857 C = 8535.789723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.141 4.141 5 C 0.520 3.480 6 O -0.546 6.546 7 N -0.718 5.718 8 C 0.167 3.833 9 C -0.072 4.072 10 C -0.195 4.195 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.151 3.849 14 O -0.176 6.176 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.171 4.171 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 -4.820 -11.279 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 C -0.200 4.200 4 C -0.198 4.198 5 C 0.306 3.694 6 O -0.423 6.423 7 N -0.370 5.370 8 C 0.044 3.956 9 C -0.073 4.073 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.246 4.246 13 C 0.097 3.903 14 O -0.080 6.080 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.191 4.191 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.134 -4.730 -10.437 15.977 hybrid contribution 1.444 0.041 -0.200 1.458 sum -9.689 -4.689 -10.637 15.133 Atomic orbital electron populations 1.21646 0.92091 1.02693 1.01928 1.20817 0.97933 0.96553 0.93734 1.21884 1.01602 0.93639 1.02855 1.21868 1.01455 1.00492 0.95992 1.20574 0.82184 0.79438 0.87229 1.90674 1.55437 1.49004 1.47234 1.46153 1.06899 1.58353 1.25563 1.20153 0.90227 0.97397 0.87826 1.19274 0.93200 0.95288 0.99549 1.20478 0.94019 1.00001 1.07001 1.20744 0.93855 0.97108 0.97699 1.21242 1.00748 0.96851 1.05709 1.19321 0.91515 0.87852 0.91621 1.83982 1.21035 1.36016 1.66950 1.21376 0.78472 1.11517 1.35592 0.88977 1.25299 1.00561 0.95034 0.95576 1.70042 1.36304 1.11249 1.31914 0.85643 0.80563 0.78685 0.78512 1.19080 1.20104 1.20084 1.20088 0.91530 1.00544 1.06965 0.91948 0.92173 0.92042 0.91824 0.91414 0.91938 0.92103 0.91429 0.91937 0.76272 0.91025 0.90926 0.87531 0.87286 0.85457 0.91985 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 7.76 37.16 0.29 -0.94 16 2 C -0.09 -0.88 0.87 -155.67 -0.14 -1.02 16 3 C -0.14 -1.29 8.37 37.16 0.31 -0.98 16 4 C -0.14 -1.16 8.37 37.15 0.31 -0.85 16 5 C 0.52 7.09 6.48 -10.98 -0.07 7.02 16 6 O -0.55 -9.41 15.98 5.56 0.09 -9.33 16 7 N -0.72 -9.47 5.33 -61.47 -0.33 -9.80 16 8 C 0.17 2.47 5.80 -5.19 -0.03 2.44 16 9 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 10 C -0.20 -3.17 9.70 -39.53 -0.38 -3.56 16 11 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 12 C -0.23 -4.68 9.17 -39.40 -0.36 -5.05 16 13 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 14 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 15 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 16 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.79 13.67 55.48 0.76 -24.04 16 19 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 24 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.50 7.57 -51.93 -0.39 0.10 16 33 H 0.40 4.76 7.30 -40.82 -0.30 4.47 16 34 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -31.09 337.53 -6.73 -37.82 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.85 Total: 6.55 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.46 Total: -16.46 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.43 Total: -33.83 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.09 -6.73 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113110709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.801 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds