Wall clock time and date at job start Mon Mar 30 2020 01:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.52990 * 109.47457 * 240.00149 * 2 1 3 5 5 C 1.50700 * 109.46849 * 119.99736 * 2 1 3 6 6 O 1.21274 * 120.00375 * 0.02562 * 5 2 1 7 7 N 1.34783 * 119.99813 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47635 * 299.99651 * 1 2 3 25 25 H 1.09007 * 109.46996 * 60.00441 * 1 2 3 26 26 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47118 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47346 * 300.00363 * 3 2 1 29 29 H 1.09003 * 109.47032 * 59.99971 * 3 2 1 30 30 H 1.09004 * 109.47581 * 299.99949 * 4 2 1 31 31 H 1.09007 * 109.47499 * 59.99717 * 4 2 1 32 32 H 1.09002 * 109.47490 * 179.97438 * 4 2 1 33 33 H 0.97004 * 119.99718 * 0.02562 * 7 5 2 34 34 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 35 35 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0322 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8331 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3527 -1.5229 2.6407 10 6 6.0446 -2.5600 2.0415 11 6 7.4274 -2.5628 2.0405 12 6 8.1219 -1.5260 2.6326 13 6 7.4303 -0.4864 3.2399 14 8 8.1101 0.5309 3.8279 15 6 9.4516 0.4129 3.8942 16 1 9.9444 -0.4220 3.4184 17 6 10.1983 1.3637 4.5732 18 7 9.5980 2.3804 5.1531 19 14 12.0569 1.1998 4.6657 20 1 12.4828 -0.0226 3.9380 21 1 12.6902 2.3909 4.0448 22 1 12.4750 1.1012 6.0872 23 6 6.0412 -0.4868 3.2398 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 3.9877 -0.4638 0.8059 34 1 3.4828 -2.5519 2.6392 35 1 3.4818 -1.0110 3.5301 36 1 5.5038 -3.3692 1.5734 37 1 7.9649 -3.3740 1.5722 38 1 9.2020 -1.5261 2.6270 39 1 10.1204 3.0453 5.6284 40 1 5.5004 0.3222 3.7081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113110709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:47 Heat of formation + Delta-G solvation = -79.372901 kcal Electronic energy + Delta-G solvation = -20928.026153 eV Core-core repulsion = 17706.965944 eV Total energy + Delta-G solvation = -3221.060209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30482 -40.70428 -38.53040 -36.60563 -35.80705 -34.29081 -32.19380 -30.78013 -28.21921 -28.19272 -27.58431 -26.89461 -23.74913 -23.24557 -22.38023 -20.53363 -19.49543 -18.82672 -17.67950 -17.14104 -16.82805 -16.60361 -16.11781 -16.06936 -15.54716 -15.31426 -15.02049 -14.73350 -14.57552 -14.30422 -13.96134 -13.67388 -13.33661 -13.30367 -13.04694 -13.03606 -12.87983 -12.61872 -12.56061 -12.37807 -12.28984 -12.08857 -11.89555 -11.84180 -11.22301 -10.85729 -10.75884 -10.13270 -9.76132 -9.04572 -8.47688 -6.16345 0.37283 0.69164 1.35817 1.43580 1.53873 1.62334 2.16841 2.25777 2.84917 3.14665 3.38704 3.63600 3.78971 3.87871 3.93862 4.08008 4.27738 4.29876 4.39550 4.51528 4.65054 4.71167 4.72821 4.73249 4.83687 4.95203 4.96076 5.00308 5.02606 5.11356 5.22049 5.24155 5.32959 5.34470 5.40439 5.61140 5.69365 5.70523 6.01018 6.15181 6.52571 6.97212 7.20619 7.77240 8.75592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.003450 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.563240 B = 8115.113857 C = 8535.789723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.137 4.137 5 C 0.516 3.484 6 O -0.586 6.586 7 N -0.712 5.712 8 C 0.172 3.828 9 C -0.058 4.058 10 C -0.169 4.169 11 C -0.068 4.068 12 C -0.234 4.234 13 C 0.113 3.887 14 O -0.232 6.232 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.249 1.249 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.182 4.182 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 -6.998 -13.919 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.199 4.199 4 C -0.195 4.195 5 C 0.304 3.696 6 O -0.466 6.466 7 N -0.364 5.364 8 C 0.049 3.951 9 C -0.059 4.059 10 C -0.188 4.188 11 C -0.086 4.086 12 C -0.253 4.253 13 C 0.063 3.937 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.173 1.173 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.202 4.202 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.278 -6.947 -13.125 18.648 hybrid contribution 1.203 0.509 0.493 1.396 sum -10.075 -6.438 -12.632 17.393 Atomic orbital electron populations 1.21659 0.91835 1.02280 1.02479 1.20868 0.98099 0.96841 0.92765 1.21906 1.01583 0.92966 1.03438 1.21879 1.01749 1.00303 0.95550 1.21288 0.81694 0.78764 0.87854 1.90658 1.56308 1.50765 1.48850 1.46068 1.07194 1.58072 1.25042 1.20031 0.88613 0.98225 0.88263 1.19436 0.94201 0.94191 0.98062 1.20990 0.93842 0.99747 1.04178 1.21164 0.94451 0.96697 0.96296 1.21375 1.00726 0.97263 1.05974 1.19840 0.92601 0.88473 0.92768 1.83948 1.21454 1.38667 1.69848 1.21873 0.78958 1.12121 1.35922 0.87857 1.26584 1.06056 0.94433 0.94969 1.70189 1.38525 1.12871 1.34292 0.84531 0.73571 0.79369 0.78762 1.17255 1.19374 1.19585 1.20210 0.90714 1.01552 1.07759 0.93594 0.89419 0.92946 0.91853 0.88969 0.93284 0.92392 0.89196 0.91471 0.75287 0.89653 0.92224 0.83443 0.83256 0.86118 0.91875 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 7.76 71.98 0.56 -1.67 16 2 C -0.08 -1.51 0.87 -52.93 -0.05 -1.56 16 3 C -0.14 -2.30 8.37 71.98 0.60 -1.69 16 4 C -0.14 -1.83 8.37 71.98 0.60 -1.23 16 5 C 0.52 13.44 6.48 87.66 0.57 14.01 16 6 O -0.59 -19.94 15.98 -3.01 -0.05 -19.98 16 7 N -0.71 -17.55 5.33 -466.79 -2.49 -20.04 16 8 C 0.17 4.82 5.80 85.63 0.50 5.31 16 9 C -0.06 -1.85 5.25 -19.88 -0.10 -1.96 16 10 C -0.17 -4.75 9.70 22.30 0.22 -4.54 16 11 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 12 C -0.23 -9.55 9.17 22.39 0.21 -9.34 16 13 C 0.11 5.43 6.65 22.58 0.15 5.58 16 14 O -0.23 -13.69 9.76 -22.74 -0.22 -13.91 16 15 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 16 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 17 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 18 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 19 Si 1.02 42.03 29.55 68.60 2.03 44.05 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.18 -7.49 9.65 22.39 0.22 -7.27 16 24 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 25 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.05 1.02 8.10 -2.39 -0.02 1.01 16 27 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.84 7.57 -2.39 -0.02 0.82 16 33 H 0.41 8.83 7.30 -92.71 -0.68 8.16 16 34 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 35 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -72.59 337.53 4.72 -67.86 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.36 Total: 27.59 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.80 Total: -29.91 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.19 Total: -75.70 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.27 Total: -33.90 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.59 4.72 -67.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113110709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.508 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds