Wall clock time and date at job start Mon Mar 30 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.52996 * 109.46647 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.42895 * 114.00539 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47630 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99875 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00428 * 180.02562 * 7 6 5 10 10 C 1.39236 * 120.00141 * 184.29419 * 9 7 6 11 11 C 1.39480 * 119.83106 * 324.70365 * 10 9 7 12 12 C 1.36375 * 120.16649 * 180.30100 * 11 10 9 13 13 C 1.40868 * 119.82898 * 359.48341 * 12 11 10 14 14 C 1.41155 * 120.16304 * 180.25634 * 13 12 11 15 15 H 1.08007 * 119.99709 * 215.01619 * 14 13 12 16 16 C 1.39906 * 120.00720 * 35.00344 * 14 13 12 17 17 N 1.30873 * 119.99293 * 355.55656 * 16 14 13 18 18 Si 1.86797 * 120.00240 * 175.54751 * 16 14 13 19 19 H 1.48494 * 109.47220 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46828 * 120.00790 * 18 16 14 21 21 H 1.48499 * 109.47027 * 240.00626 * 18 16 14 22 22 C 1.40869 * 119.67371 * 0.51350 * 13 12 11 23 23 C 1.36379 * 119.82277 * 359.73907 * 22 13 12 24 24 H 1.08992 * 109.47258 * 299.99796 * 1 2 3 25 25 H 1.09002 * 109.47042 * 60.00516 * 1 2 3 26 26 H 1.09002 * 109.46570 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47053 * 239.99546 * 2 1 3 28 28 H 1.09002 * 109.46614 * 119.99806 * 2 1 3 29 29 H 1.09000 * 109.46814 * 60.00309 * 3 2 1 30 30 H 1.08994 * 109.46969 * 299.99892 * 3 2 1 31 31 H 1.09006 * 109.47203 * 60.00396 * 4 3 2 32 32 H 1.08994 * 109.47650 * 299.99845 * 4 3 2 33 33 H 1.08997 * 109.46922 * 59.99455 * 6 5 4 34 34 H 1.09001 * 109.46840 * 300.00636 * 6 5 4 35 35 H 0.97003 * 119.99834 * 4.28293 * 9 7 6 36 36 H 1.08000 * 119.91840 * 0.02701 * 11 10 9 37 37 H 1.08003 * 120.08232 * 179.70255 * 12 11 10 38 38 H 0.97006 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.08862 * 179.71587 * 22 13 12 40 40 H 1.08000 * 119.90940 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.4708 2.9027 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0010 5.2154 -0.0005 9 7 7.1609 4.7088 -0.0006 10 6 7.5208 6.0508 0.0897 11 6 6.7324 7.0235 -0.5250 12 6 7.0819 8.3393 -0.4462 13 6 8.2364 8.7161 0.2676 14 6 8.6017 10.0766 0.3583 15 1 9.6449 10.3562 0.3660 16 6 7.6126 11.0628 0.4381 17 7 6.3500 10.7324 0.3411 18 14 8.0941 12.8509 0.6832 19 1 9.5731 12.9590 0.7615 20 1 7.5990 13.6581 -0.4607 21 1 7.4931 13.3571 1.9432 22 6 9.0276 7.7281 0.8858 23 6 8.6681 6.4157 0.7938 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.8736 2.4187 -0.8897 34 1 5.8736 2.4194 0.8902 35 1 7.8469 4.0259 -0.0637 36 1 5.8454 6.7334 -1.0686 37 1 6.4731 9.0909 -0.9267 38 1 5.6641 11.4162 0.3967 39 1 9.9166 8.0090 1.4308 40 1 9.2735 5.6571 1.2676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118195733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:08 Heat of formation + Delta-G solvation = -74.805594 kcal Electronic energy + Delta-G solvation = -20273.275760 eV Core-core repulsion = 17052.413604 eV Total energy + Delta-G solvation = -3220.862156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.71595 -38.08842 -37.01316 -35.11372 -34.37620 -32.89329 -30.12962 -29.47180 -29.04672 -27.32206 -24.63939 -23.45855 -21.57954 -21.34637 -20.93922 -19.57027 -17.28187 -17.09790 -16.87096 -16.63227 -15.66975 -15.41116 -15.12405 -14.57280 -14.22402 -13.91408 -13.69745 -13.20160 -13.05099 -12.73068 -12.59487 -12.13403 -11.96238 -11.80070 -11.60739 -11.46042 -11.36475 -11.15727 -11.12927 -10.90780 -10.86972 -10.48991 -9.90448 -9.83638 -9.77016 -9.41296 -8.97610 -8.70753 -7.50583 -6.87417 -6.57093 -4.31186 2.58030 3.00831 3.05960 3.11418 3.12517 3.17648 3.38503 4.00695 4.10938 4.65072 4.73835 4.76270 4.86534 4.97321 5.00792 5.13251 5.18724 5.21421 5.34632 5.52821 5.55518 5.62207 5.68322 5.85057 5.98605 6.06348 6.14252 6.40353 6.79831 6.93619 7.04938 7.08242 7.23329 7.31428 7.65779 7.70129 7.99211 8.11769 8.21263 8.35497 8.69395 8.78259 8.95668 9.03425 10.33972 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.002820 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.647747 B = 9925.200440 C =10656.819566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.362 6.362 6 C 0.048 3.952 7 C 0.496 3.504 8 O -0.505 6.505 9 N -0.653 5.653 10 C 0.006 3.994 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.099 3.901 14 C -0.463 4.463 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.807 5.807 18 Si 0.915 3.085 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.395 0.605 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -18.098 -1.012 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.017 4.017 5 O -0.280 6.280 6 C -0.032 4.032 7 C 0.281 3.719 8 O -0.379 6.379 9 N -0.298 5.298 10 C -0.086 4.086 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.097 3.903 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.147 4.147 17 N -0.434 5.434 18 Si 0.740 3.260 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.224 4.224 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.038 -17.223 -0.997 17.972 hybrid contribution 0.693 0.139 0.274 0.758 sum -4.346 -17.084 -0.722 17.642 Atomic orbital electron populations 1.21757 0.95401 1.01606 1.02206 1.21441 0.96300 0.96045 1.02069 1.21547 0.93287 0.97108 1.03865 1.22582 0.95449 0.83666 1.00000 1.88036 1.18745 1.25825 1.95364 1.22182 0.83658 0.95336 1.02034 1.20180 0.83188 0.90098 0.78387 1.90744 1.49202 1.51133 1.46828 1.42847 1.06318 1.07718 1.72920 1.17257 1.00407 0.81609 1.09364 1.20665 0.98451 0.93137 0.99106 1.21312 0.99914 0.93948 1.01216 1.17744 0.91291 0.92892 0.88379 1.19513 0.94068 0.90779 1.44982 0.90581 1.25909 0.94600 1.01281 0.92953 1.69804 1.00618 1.35302 1.37643 0.86149 0.79749 0.81572 0.78488 1.18633 1.19999 1.20007 1.20686 1.03210 0.92298 1.06189 1.20070 0.97090 0.96108 1.00074 0.92528 0.92527 0.92694 0.91902 0.91899 0.90878 0.90882 0.93350 0.93337 0.90726 0.90641 0.77201 0.87438 0.85171 0.91106 0.88496 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -1.16 5.58 -26.73 -0.15 -1.31 16 4 C 0.06 0.61 5.94 37.16 0.22 0.83 16 5 O -0.36 -5.40 9.88 -55.14 -0.54 -5.94 16 6 C 0.05 0.62 6.42 36.00 0.23 0.85 16 7 C 0.50 9.14 7.74 -10.99 -0.09 9.05 16 8 O -0.51 -12.06 13.92 -14.35 -0.20 -12.26 16 9 N -0.65 -11.49 5.30 -9.74 -0.05 -11.54 16 10 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 11 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 12 C -0.14 -3.94 8.61 -39.26 -0.34 -4.28 16 13 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 14 C -0.46 -12.48 9.02 -37.85 -0.34 -12.82 16 15 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 16 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 17 N -0.81 -21.90 10.61 55.55 0.59 -21.31 16 18 Si 0.92 19.35 29.56 -169.99 -5.03 14.33 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.20 -4.96 9.74 -39.26 -0.38 -5.34 16 23 C -0.11 -2.48 9.90 -39.79 -0.39 -2.88 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 5.11 8.82 -40.82 -0.36 4.75 16 36 H 0.11 2.79 6.22 -52.49 -0.33 2.46 16 37 H 0.13 3.73 6.15 -52.48 -0.32 3.40 16 38 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -32.61 338.29 -8.77 -41.38 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.05 Total: 7.17 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.58 Total: -16.93 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.54 Total: -32.85 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.74 Total: -18.20 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.61 -8.77 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118195733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.422 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds