Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.52996 * 109.46647 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.42895 * 114.00539 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47630 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99875 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00428 * 180.02562 * 7 6 5 10 10 C 1.39236 * 120.00141 * 184.29419 * 9 7 6 11 11 C 1.39480 * 119.83106 * 324.70365 * 10 9 7 12 12 C 1.36375 * 120.16649 * 180.30100 * 11 10 9 13 13 C 1.40868 * 119.82898 * 359.48341 * 12 11 10 14 14 C 1.41155 * 120.16304 * 180.25634 * 13 12 11 15 15 H 1.08007 * 119.99709 * 215.01619 * 14 13 12 16 16 C 1.39906 * 120.00720 * 35.00344 * 14 13 12 17 17 N 1.30873 * 119.99293 * 355.55656 * 16 14 13 18 18 Si 1.86797 * 120.00240 * 175.54751 * 16 14 13 19 19 H 1.48494 * 109.47220 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46828 * 120.00790 * 18 16 14 21 21 H 1.48499 * 109.47027 * 240.00626 * 18 16 14 22 22 C 1.40869 * 119.67371 * 0.51350 * 13 12 11 23 23 C 1.36379 * 119.82277 * 359.73907 * 22 13 12 24 24 H 1.08992 * 109.47258 * 299.99796 * 1 2 3 25 25 H 1.09002 * 109.47042 * 60.00516 * 1 2 3 26 26 H 1.09002 * 109.46570 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47053 * 239.99546 * 2 1 3 28 28 H 1.09002 * 109.46614 * 119.99806 * 2 1 3 29 29 H 1.09000 * 109.46814 * 60.00309 * 3 2 1 30 30 H 1.08994 * 109.46969 * 299.99892 * 3 2 1 31 31 H 1.09006 * 109.47203 * 60.00396 * 4 3 2 32 32 H 1.08994 * 109.47650 * 299.99845 * 4 3 2 33 33 H 1.08997 * 109.46922 * 59.99455 * 6 5 4 34 34 H 1.09001 * 109.46840 * 300.00636 * 6 5 4 35 35 H 0.97003 * 119.99834 * 4.28293 * 9 7 6 36 36 H 1.08000 * 119.91840 * 0.02701 * 11 10 9 37 37 H 1.08003 * 120.08232 * 179.70255 * 12 11 10 38 38 H 0.97006 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.08862 * 179.71587 * 22 13 12 40 40 H 1.08000 * 119.90940 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.4708 2.9027 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0010 5.2154 -0.0005 9 7 7.1609 4.7088 -0.0006 10 6 7.5208 6.0508 0.0897 11 6 6.7324 7.0235 -0.5250 12 6 7.0819 8.3393 -0.4462 13 6 8.2364 8.7161 0.2676 14 6 8.6017 10.0766 0.3583 15 1 9.6449 10.3562 0.3660 16 6 7.6126 11.0628 0.4381 17 7 6.3500 10.7324 0.3411 18 14 8.0941 12.8509 0.6832 19 1 9.5731 12.9590 0.7615 20 1 7.5990 13.6581 -0.4607 21 1 7.4931 13.3571 1.9432 22 6 9.0276 7.7281 0.8858 23 6 8.6681 6.4157 0.7938 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.8736 2.4187 -0.8897 34 1 5.8736 2.4194 0.8902 35 1 7.8469 4.0259 -0.0637 36 1 5.8454 6.7334 -1.0686 37 1 6.4731 9.0909 -0.9267 38 1 5.6641 11.4162 0.3967 39 1 9.9166 8.0090 1.4308 40 1 9.2735 5.6571 1.2676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118195733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = -94.859506 kcal Electronic energy + Delta-G solvation = -20274.145363 eV Core-core repulsion = 17052.413604 eV Total energy + Delta-G solvation = -3221.731758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24857 -39.39210 -38.54765 -36.19024 -35.78462 -34.71624 -31.58685 -31.22066 -30.37023 -28.57490 -26.40506 -24.18676 -23.31469 -22.81872 -22.03549 -21.17044 -19.23902 -18.62704 -18.08871 -17.53074 -17.05781 -16.94104 -16.32254 -15.82725 -15.70475 -15.38927 -14.80558 -14.66145 -14.40138 -13.99673 -13.86963 -13.80204 -13.52003 -13.34046 -12.87788 -12.83175 -12.65140 -12.40514 -12.32140 -11.96769 -11.86859 -11.77793 -11.65835 -11.52775 -11.20844 -10.76191 -10.64394 -10.46054 -9.46153 -8.75991 -8.50074 -6.33571 0.79025 1.12455 1.38531 1.42842 1.54877 1.73662 1.95181 2.23596 2.80722 3.04796 3.67077 3.80035 3.99296 4.08825 4.21415 4.23638 4.30024 4.43466 4.44325 4.47693 4.48559 4.69347 4.91321 4.95138 4.99144 5.03053 5.12059 5.16162 5.23610 5.33868 5.34965 5.41571 5.44610 5.70671 5.85021 6.07110 6.13586 6.16672 6.35479 6.70551 6.72734 6.95572 7.01854 7.40505 8.43189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.002820 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.647747 B = 9925.200440 C =10656.819566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.123 4.123 4 C 0.056 3.944 5 O -0.405 6.405 6 C 0.058 3.942 7 C 0.490 3.510 8 O -0.570 6.570 9 N -0.639 5.639 10 C 0.020 3.980 11 C -0.111 4.111 12 C -0.170 4.170 13 C 0.064 3.936 14 C -0.495 4.495 15 H 0.081 0.919 16 C 0.019 3.981 17 N -0.849 5.849 18 Si 0.993 3.007 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.208 4.208 23 C -0.105 4.105 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.423 0.577 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.282 0.718 39 H 0.115 0.885 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -20.761 -0.219 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.160 4.160 4 C -0.020 4.020 5 O -0.325 6.325 6 C -0.021 4.021 7 C 0.278 3.722 8 O -0.448 6.448 9 N -0.287 5.287 10 C -0.074 4.074 11 C -0.131 4.131 12 C -0.190 4.190 13 C 0.062 3.938 14 C -0.525 4.525 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.477 5.477 18 Si 0.814 3.186 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.228 4.228 23 C -0.125 4.125 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.261 0.739 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.365 -19.962 -0.211 20.244 hybrid contribution 0.138 0.763 0.009 0.775 sum -3.226 -19.199 -0.202 19.469 Atomic orbital electron populations 1.21784 0.95391 1.02314 1.01739 1.21411 0.96295 0.94340 1.03143 1.21586 0.93581 0.98531 1.02335 1.22812 0.95295 0.81891 1.01967 1.87993 1.19883 1.28793 1.95818 1.22236 0.83352 0.90839 1.05652 1.21345 0.82392 0.92343 0.76135 1.90732 1.50948 1.53585 1.49507 1.42724 1.07360 1.06326 1.72247 1.17339 0.99460 0.83431 1.07136 1.20671 0.98797 0.93486 1.00182 1.21170 1.00766 0.94299 1.02778 1.18094 0.92029 0.94177 0.89529 1.19803 0.94627 0.91499 1.46621 0.90058 1.26902 0.94227 1.06004 0.92054 1.69934 1.01856 1.36904 1.38972 0.84994 0.79787 0.75359 0.78491 1.17539 1.19325 1.19501 1.20983 1.03258 0.92932 1.05643 1.20467 0.96794 0.96345 0.98886 0.93068 0.93026 0.91362 0.90743 0.90787 0.92512 0.92437 0.91205 0.91276 0.86724 0.86817 0.73874 0.88930 0.87935 0.90799 0.86670 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.11 -1.41 5.93 30.60 0.18 -1.23 16 3 C -0.12 -2.24 5.58 30.59 0.17 -2.07 16 4 C 0.06 1.00 5.94 71.98 0.43 1.43 16 5 O -0.41 -11.39 9.88 -129.94 -1.28 -12.68 16 6 C 0.06 1.30 6.42 71.23 0.46 1.76 16 7 C 0.49 17.28 7.74 87.66 0.68 17.96 16 8 O -0.57 -27.80 13.92 16.00 0.22 -27.58 16 9 N -0.64 -20.80 5.30 -303.13 -1.61 -22.41 16 10 C 0.02 0.87 6.31 38.56 0.24 1.11 16 11 C -0.11 -5.90 8.61 22.13 0.19 -5.71 16 12 C -0.17 -9.84 8.61 22.48 0.19 -9.64 16 13 C 0.06 3.59 5.55 -21.28 -0.12 3.47 16 14 C -0.49 -27.51 9.02 23.39 0.21 -27.30 16 15 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 16 C 0.02 1.03 5.42 85.24 0.46 1.49 16 17 N -0.85 -48.48 10.61 21.82 0.23 -48.25 16 18 Si 0.99 40.49 29.56 68.60 2.03 42.51 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 C -0.21 -9.98 9.74 22.48 0.22 -9.76 16 23 C -0.11 -4.34 9.90 22.13 0.22 -4.12 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.42 9.02 8.82 -92.71 -0.82 8.20 16 36 H 0.09 5.11 6.22 -2.91 -0.02 5.09 16 37 H 0.10 6.38 6.15 -2.91 -0.02 6.36 16 38 H 0.28 14.74 8.30 -92.70 -0.77 13.97 16 39 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -76.94 338.29 4.06 -72.89 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.21 Total: 29.34 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.25 Total: -33.82 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.38 Total: -70.66 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.06 Total: -40.26 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -76.94 4.06 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118195733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.971 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds