Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 6 6 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 7 7 C 1.36937 * 119.99830 * 84.99489 * 6 4 2 8 8 H 1.08000 * 120.00169 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99805 * 180.02562 * 7 6 4 10 10 N 1.31623 * 120.00037 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00081 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47039 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47512 * 120.00191 * 11 9 7 14 14 H 1.48501 * 109.47161 * 240.00552 * 11 9 7 15 15 C 1.50699 * 109.47337 * 64.99823 * 4 2 1 16 16 C 1.38250 * 119.94748 * 79.72532 * 15 4 2 17 17 C 1.38196 * 120.11596 * 179.77535 * 16 15 4 18 18 C 1.38701 * 120.06650 * 0.57019 * 17 16 15 19 19 C 1.38974 * 119.81942 * 359.61676 * 18 17 16 20 20 C 1.38199 * 119.94355 * 260.00311 * 15 4 2 21 21 O 1.36110 * 120.78479 * 180.27193 * 19 18 17 22 22 C 1.43171 * 116.71374 * 342.81080 * 21 19 18 23 23 C 1.53472 * 108.25015 * 46.16416 * 22 21 19 24 24 O 1.36106 * 119.39680 * 179.53506 * 18 17 16 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 0.96997 * 119.99894 * 265.00024 * 6 4 2 33 33 H 0.97003 * 119.99804 * 179.97438 * 10 9 7 34 34 H 1.08002 * 119.93926 * 0.03239 * 16 15 4 35 35 H 1.08002 * 119.96510 * 180.28807 * 17 16 15 36 36 H 1.08007 * 119.96625 * 359.97438 * 20 15 4 37 37 H 1.08999 * 109.70621 * 165.85372 * 22 21 19 38 38 H 1.08996 * 109.71030 * 286.47795 * 22 21 19 39 39 H 1.09007 * 109.70770 * 59.94456 * 23 22 21 40 40 H 1.09001 * 109.71234 * 180.57010 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6055 -1.7197 -1.2953 6 7 3.5001 -0.8262 -1.1907 7 6 4.0853 -1.8627 -0.5135 8 1 3.4705 -2.6029 -0.0231 9 6 5.4687 -1.9620 -0.4576 10 7 6.2180 -1.0596 -1.0549 11 14 6.2670 -3.3762 0.4655 12 1 5.2128 -4.2470 1.0449 13 1 7.1048 -4.1682 -0.4706 14 1 7.1181 -2.8374 1.5567 15 6 1.6414 0.0572 -2.4766 16 6 2.3704 1.1690 -2.8558 17 6 2.0107 1.8825 -3.9832 18 6 0.9097 1.4919 -4.7310 19 6 0.1745 0.3766 -4.3477 20 6 0.5441 -0.3382 -3.2179 21 8 -0.9060 -0.0274 -5.0700 22 6 -1.4658 0.9267 -5.9789 23 6 -0.3172 1.5720 -6.7661 24 8 0.5620 2.2102 -5.8335 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 4.0523 -0.1616 -1.6314 33 1 7.1848 -1.1289 -1.0154 34 1 3.2251 1.4779 -2.2722 35 1 2.5847 2.7480 -4.2799 36 1 -0.0262 -1.2047 -2.9173 37 1 -2.1459 0.4240 -6.6667 38 1 -2.0053 1.6926 -5.4218 39 1 0.2264 0.8053 -7.3182 40 1 -0.7169 2.3116 -7.4599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120135622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = -41.460808 kcal Electronic energy + Delta-G solvation = -22080.035769 eV Core-core repulsion = 18860.619552 eV Total energy + Delta-G solvation = -3219.416217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09570 -38.64411 -37.11329 -35.66586 -33.15026 -31.13052 -30.61410 -30.11504 -28.19379 -26.62963 -25.51928 -24.25276 -22.68858 -22.35636 -20.60424 -19.10694 -18.22965 -17.27957 -16.97835 -16.76765 -15.37324 -15.12415 -14.91153 -14.42465 -14.28543 -13.99964 -13.86153 -13.62986 -13.41209 -13.08726 -12.84789 -12.62007 -12.02042 -11.76108 -11.50677 -11.19790 -11.05165 -10.95821 -10.86621 -10.84926 -10.41688 -10.31030 -10.27502 -10.09836 -9.77199 -9.64170 -8.89700 -8.26980 -7.67609 -6.94696 -5.76079 -3.04151 1.62628 1.64521 3.11961 3.30095 3.44529 3.50522 3.52398 4.03892 4.21591 4.60872 4.71536 4.80311 4.82227 5.12550 5.31714 5.36325 5.45434 5.52703 5.61459 5.67867 5.72960 5.74368 5.84241 6.03125 6.15225 6.21986 6.33138 6.41604 6.43129 6.48799 6.53477 6.65587 6.77340 6.92351 6.98542 7.05282 7.11509 7.21575 7.61145 7.72572 8.42347 9.54067 10.09744 10.45234 11.46616 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.004781 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.641425 B = 5855.249053 C = 6218.985128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.219 3.781 5 H 0.056 0.944 6 N -0.718 5.718 7 C -0.237 4.237 8 H 0.072 0.928 9 C -0.012 4.012 10 N -0.932 5.932 11 Si 0.905 3.095 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.054 4.054 16 C -0.096 4.096 17 C -0.115 4.115 18 C 0.033 3.967 19 C 0.044 3.956 20 C -0.110 4.110 21 O -0.310 6.310 22 C 0.022 3.978 23 C 0.021 3.979 24 O -0.311 6.311 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 6.506 -8.011 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.201 4.201 4 C 0.109 3.891 5 H 0.074 0.926 6 N -0.359 5.359 7 C -0.368 4.368 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.580 5.580 11 Si 0.737 3.263 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.055 4.055 16 C -0.115 4.115 17 C -0.133 4.133 18 C -0.011 4.011 19 C -0.001 4.001 20 C -0.129 4.129 21 O -0.225 6.225 22 C -0.054 4.054 23 C -0.055 4.055 24 O -0.226 6.226 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.221 0.779 33 H 0.064 0.936 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.045 6.341 -7.964 18.166 hybrid contribution 0.559 -0.505 0.102 0.760 sum -14.486 5.836 -7.862 17.485 Atomic orbital electron populations 1.21869 0.96781 1.00859 1.00827 1.21741 0.93672 0.97092 1.00606 1.21899 1.02146 0.95960 1.00086 1.19212 0.86688 0.95038 0.88187 0.92565 1.42500 0.98764 1.31061 1.63574 1.19284 0.89777 1.02579 1.25162 0.91012 1.24712 0.96154 0.98755 1.01147 1.69668 1.04173 1.35974 1.48194 0.86142 0.79320 0.81796 0.79081 1.20550 1.21943 1.21928 1.20109 0.93382 0.95198 0.96846 1.20938 0.99996 0.94774 0.95742 1.20406 0.94925 1.01986 0.96013 1.18800 0.97149 0.94943 0.90226 1.18791 0.89541 0.97067 0.94653 1.20265 0.98945 1.01181 0.92549 1.86289 1.43198 1.39519 1.53495 1.23539 0.95617 0.93411 0.92832 1.23544 0.91384 0.99248 0.91290 1.86274 1.64338 1.41093 1.30940 0.93306 0.93714 0.93047 0.90778 0.94389 0.91666 0.92998 0.77947 0.93559 0.84421 0.85225 0.85198 0.86586 0.90867 0.90782 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.91 37.16 0.33 -1.83 16 2 C -0.11 -1.95 2.88 -90.62 -0.26 -2.21 16 3 C -0.14 -2.46 7.83 37.16 0.29 -2.17 16 4 C 0.22 4.34 2.34 -69.08 -0.16 4.17 16 5 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 6 N -0.72 -17.47 4.52 -54.55 -0.25 -17.71 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 11 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C -0.05 -0.97 3.87 -104.63 -0.40 -1.38 16 16 C -0.10 -1.68 6.69 -39.59 -0.26 -1.95 16 17 C -0.11 -1.85 9.96 -39.43 -0.39 -2.25 16 18 C 0.03 0.53 6.49 -39.14 -0.25 0.28 16 19 C 0.04 0.71 6.49 -39.14 -0.25 0.45 16 20 C -0.11 -1.85 8.67 -39.42 -0.34 -2.19 16 21 O -0.31 -4.43 10.42 -32.87 -0.34 -4.78 16 22 C 0.02 0.21 7.26 37.40 0.27 0.49 16 23 C 0.02 0.21 7.26 37.40 0.27 0.48 16 24 O -0.31 -4.41 10.42 -32.86 -0.34 -4.75 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.75 6.76 -51.93 -0.35 0.40 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.26 7.57 -51.93 -0.39 0.86 16 31 H 0.05 0.84 5.64 -51.93 -0.29 0.55 16 32 H 0.39 9.89 6.07 -40.82 -0.25 9.64 16 33 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.14 2.51 6.03 -52.49 -0.32 2.19 16 35 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.13 2.02 8.03 -52.48 -0.42 1.60 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -30.90 320.74 -7.60 -38.49 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.79 Total: 8.79 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.41 Total: -15.10 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.48 Total: -44.70 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.68 Total: -9.53 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.90 -7.60 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120135622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.966 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds