Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 6 6 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 7 7 C 1.36937 * 119.99830 * 84.99489 * 6 4 2 8 8 H 1.08000 * 120.00169 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99805 * 180.02562 * 7 6 4 10 10 N 1.31623 * 120.00037 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00081 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47039 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47512 * 120.00191 * 11 9 7 14 14 H 1.48501 * 109.47161 * 240.00552 * 11 9 7 15 15 C 1.50699 * 109.47337 * 64.99823 * 4 2 1 16 16 C 1.38250 * 119.94748 * 79.72532 * 15 4 2 17 17 C 1.38196 * 120.11596 * 179.77535 * 16 15 4 18 18 C 1.38701 * 120.06650 * 0.57019 * 17 16 15 19 19 C 1.38974 * 119.81942 * 359.61676 * 18 17 16 20 20 C 1.38199 * 119.94355 * 260.00311 * 15 4 2 21 21 O 1.36110 * 120.78479 * 180.27193 * 19 18 17 22 22 C 1.43171 * 116.71374 * 342.81080 * 21 19 18 23 23 C 1.53472 * 108.25015 * 46.16416 * 22 21 19 24 24 O 1.36106 * 119.39680 * 179.53506 * 18 17 16 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 0.96997 * 119.99894 * 265.00024 * 6 4 2 33 33 H 0.97003 * 119.99804 * 179.97438 * 10 9 7 34 34 H 1.08002 * 119.93926 * 0.03239 * 16 15 4 35 35 H 1.08002 * 119.96510 * 180.28807 * 17 16 15 36 36 H 1.08007 * 119.96625 * 359.97438 * 20 15 4 37 37 H 1.08999 * 109.70621 * 165.85372 * 22 21 19 38 38 H 1.08996 * 109.71030 * 286.47795 * 22 21 19 39 39 H 1.09007 * 109.70770 * 59.94456 * 23 22 21 40 40 H 1.09001 * 109.71234 * 180.57010 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6055 -1.7197 -1.2953 6 7 3.5001 -0.8262 -1.1907 7 6 4.0853 -1.8627 -0.5135 8 1 3.4705 -2.6029 -0.0231 9 6 5.4687 -1.9620 -0.4576 10 7 6.2180 -1.0596 -1.0549 11 14 6.2670 -3.3762 0.4655 12 1 5.2128 -4.2470 1.0449 13 1 7.1048 -4.1682 -0.4706 14 1 7.1181 -2.8374 1.5567 15 6 1.6414 0.0572 -2.4766 16 6 2.3704 1.1690 -2.8558 17 6 2.0107 1.8825 -3.9832 18 6 0.9097 1.4919 -4.7310 19 6 0.1745 0.3766 -4.3477 20 6 0.5441 -0.3382 -3.2179 21 8 -0.9060 -0.0274 -5.0700 22 6 -1.4658 0.9267 -5.9789 23 6 -0.3172 1.5720 -6.7661 24 8 0.5620 2.2102 -5.8335 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 4.0523 -0.1616 -1.6314 33 1 7.1848 -1.1289 -1.0154 34 1 3.2251 1.4779 -2.2722 35 1 2.5847 2.7480 -4.2799 36 1 -0.0262 -1.2047 -2.9173 37 1 -2.1459 0.4240 -6.6667 38 1 -2.0053 1.6926 -5.4218 39 1 0.2264 0.8053 -7.3182 40 1 -0.7169 2.3116 -7.4599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120135622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = -60.000286 kcal Electronic energy + Delta-G solvation = -22080.839701 eV Core-core repulsion = 18860.619552 eV Total energy + Delta-G solvation = -3220.220149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20455 -39.99604 -38.17680 -37.08610 -35.01712 -32.53010 -31.87330 -31.61417 -29.43524 -27.96117 -27.05575 -25.57615 -24.30709 -23.67781 -21.76280 -20.42037 -19.49615 -19.08750 -18.15276 -17.96030 -16.77461 -16.43209 -16.20140 -15.84507 -15.49321 -15.38655 -15.27573 -14.92097 -14.75150 -14.55583 -14.31337 -13.76304 -13.51022 -12.96805 -12.91399 -12.87075 -12.67922 -12.47601 -12.26594 -12.03614 -11.93832 -11.87162 -11.78615 -11.50170 -11.43416 -11.20343 -10.87601 -9.53864 -8.97406 -8.90152 -7.90182 -5.17400 0.33450 0.36606 1.49409 1.49542 1.59373 2.10025 2.32262 2.58540 2.75291 3.35576 3.43965 3.72394 3.89958 3.98487 4.00199 4.11856 4.18489 4.29325 4.38788 4.42109 4.48066 4.54877 4.62252 4.63235 4.80564 4.91885 4.97699 5.04429 5.14937 5.17643 5.20115 5.25903 5.37667 5.53568 5.57263 5.62683 5.71488 5.79031 5.95954 6.32201 6.47394 7.38926 8.13298 8.38322 9.33592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.004781 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.641425 B = 5855.249053 C = 6218.985128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.136 4.136 4 C 0.217 3.783 5 H 0.049 0.951 6 N -0.728 5.728 7 C -0.233 4.233 8 H 0.076 0.924 9 C -0.073 4.073 10 N -0.969 5.969 11 Si 0.968 3.032 12 H -0.266 1.266 13 H -0.297 1.297 14 H -0.295 1.295 15 C -0.066 4.066 16 C -0.106 4.106 17 C -0.119 4.119 18 C 0.035 3.965 19 C 0.045 3.955 20 C -0.115 4.115 21 O -0.323 6.323 22 C 0.015 3.985 23 C 0.013 3.987 24 O -0.322 6.322 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.376 0.624 33 H 0.249 0.751 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 6.679 -8.989 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.109 3.891 5 H 0.067 0.933 6 N -0.369 5.369 7 C -0.365 4.365 8 H 0.094 0.906 9 C -0.265 4.265 10 N -0.620 5.620 11 Si 0.798 3.202 12 H -0.191 1.191 13 H -0.224 1.224 14 H -0.223 1.223 15 C -0.067 4.067 16 C -0.125 4.125 17 C -0.137 4.137 18 C -0.010 4.010 19 C 0.000 4.000 20 C -0.134 4.134 21 O -0.238 6.238 22 C -0.060 4.060 23 C -0.062 4.062 24 O -0.237 6.237 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.209 0.791 33 H 0.058 0.942 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.547 6.511 -8.946 20.744 hybrid contribution 1.141 -0.499 0.252 1.270 sum -16.406 6.012 -8.694 19.516 Atomic orbital electron populations 1.21768 0.93966 1.01759 1.01843 1.21602 0.95955 0.96767 0.98283 1.21807 1.00144 0.95943 1.01375 1.19335 0.84142 0.95393 0.90243 0.93260 1.42647 1.00742 1.30224 1.63262 1.19641 0.90088 1.02704 1.24075 0.90625 1.25451 0.96854 1.01330 1.02875 1.69820 1.03907 1.37965 1.50314 0.85150 0.78362 0.79145 0.77591 1.19073 1.22402 1.22250 1.19862 0.94556 0.95610 0.96661 1.20814 0.99822 0.95328 0.96531 1.20538 0.95377 1.02264 0.95547 1.18863 0.96687 0.94702 0.90722 1.18800 0.90088 0.96634 0.94443 1.20313 0.98654 1.01552 0.92864 1.86269 1.42405 1.41144 1.53952 1.23963 0.95829 0.93501 0.92691 1.23961 0.90778 1.00550 0.90887 1.86261 1.65213 1.41509 1.30749 0.92524 0.91963 0.92667 0.92944 0.92567 0.94652 0.92133 0.79079 0.94177 0.85970 0.83799 0.84343 0.82802 0.90035 0.90757 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.91 71.98 0.64 -3.16 16 2 C -0.10 -3.73 2.88 -10.79 -0.03 -3.76 16 3 C -0.14 -4.66 7.83 71.98 0.56 -4.10 16 4 C 0.22 8.75 2.34 44.24 0.10 8.85 16 5 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 6 N -0.73 -36.58 4.52 -326.50 -1.48 -38.06 16 7 C -0.23 -12.90 9.93 84.03 0.83 -12.06 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 11 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 15 C -0.07 -2.38 3.87 -19.87 -0.08 -2.46 16 16 C -0.11 -3.80 6.69 22.26 0.15 -3.65 16 17 C -0.12 -3.79 9.96 22.37 0.22 -3.57 16 18 C 0.04 1.07 6.49 22.56 0.15 1.22 16 19 C 0.05 1.39 6.49 22.56 0.15 1.54 16 20 C -0.11 -3.75 8.67 22.37 0.19 -3.56 16 21 O -0.32 -8.41 10.42 -82.57 -0.86 -9.27 16 22 C 0.01 0.23 7.26 72.14 0.52 0.76 16 23 C 0.01 0.21 7.26 72.14 0.52 0.73 16 24 O -0.32 -8.35 10.42 -82.53 -0.86 -9.21 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.52 6.76 -2.39 -0.02 1.50 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 31 H 0.06 1.96 5.64 -2.39 -0.01 1.95 16 32 H 0.38 20.17 6.07 -92.71 -0.56 19.61 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.12 4.69 6.03 -2.91 -0.02 4.68 16 35 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.14 4.17 8.03 -2.91 -0.02 4.15 16 37 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.51 320.74 4.00 -63.51 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.48 Total: 30.59 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.41 Total: -26.94 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -1.19 Total: -97.21 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.72 Total: -18.48 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -67.51 4.00 -63.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120135622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.506 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds