Wall clock time and date at job start Mon Mar 30 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 H 1.09000 * 109.47050 * 299.99699 * 4 2 1 6 6 N 1.46500 * 109.47249 * 60.00049 * 4 2 1 7 7 C 1.36939 * 119.99555 * 274.99680 * 6 4 2 8 8 H 1.07999 * 120.00498 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99885 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00371 * 179.97438 * 9 7 6 11 11 Si 1.86810 * 119.99869 * 0.02562 * 9 7 6 12 12 H 1.48490 * 109.46935 * 89.99729 * 11 9 7 13 13 H 1.48496 * 109.46829 * 209.99889 * 11 9 7 14 14 H 1.48498 * 109.46724 * 329.99773 * 11 9 7 15 15 C 1.50699 * 109.46866 * 179.97438 * 4 2 1 16 16 C 1.38260 * 119.94428 * 280.00101 * 15 4 2 17 17 C 1.38191 * 120.11288 * 180.02562 * 16 15 4 18 18 C 1.38705 * 120.06944 * 0.02562 * 17 16 15 19 19 C 1.38967 * 119.81420 * 359.87716 * 18 17 16 20 20 C 1.38195 * 119.94321 * 99.72512 * 15 4 2 21 21 O 1.36110 * 120.78065 * 180.36949 * 19 18 17 22 22 C 1.43184 * 116.68984 * 342.51968 * 21 19 18 23 23 C 1.53472 * 108.23537 * 46.30806 * 22 21 19 24 24 O 1.36104 * 119.40243 * 179.65101 * 18 17 16 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 29 29 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 32 32 H 0.96998 * 120.00364 * 94.99433 * 6 4 2 33 33 H 0.96993 * 120.00193 * 180.02562 * 10 9 7 34 34 H 1.07994 * 119.93853 * 0.03808 * 16 15 4 35 35 H 1.08001 * 119.96550 * 180.02562 * 17 16 15 36 36 H 1.08001 * 119.96671 * 359.97438 * 20 15 4 37 37 H 1.08998 * 109.71180 * 165.99165 * 22 21 19 38 38 H 1.08992 * 109.71095 * 286.62143 * 22 21 19 39 39 H 1.09001 * 109.70283 * 59.98500 * 23 22 21 40 40 H 1.08991 * 109.70476 * 180.60767 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6765 -0.2074 2.1393 6 7 1.5515 -2.1025 1.2493 7 6 0.3099 -2.3896 1.7505 8 1 -0.3094 -1.5979 2.1454 9 6 -0.1531 -3.6983 1.7500 10 7 -1.3463 -3.9744 2.2322 11 14 0.9179 -5.0677 1.0663 12 1 1.7590 -5.6282 2.1541 13 1 0.0546 -6.1384 0.5064 14 1 1.7912 -4.5250 -0.0051 15 6 3.5469 -0.7219 1.2491 16 6 4.2365 -1.6400 0.4790 17 6 5.6184 -1.6440 0.4765 18 6 6.3174 -0.7269 1.2474 19 6 5.6242 0.1972 2.0198 20 6 4.2372 0.1990 2.0141 21 8 6.2902 1.1108 2.7778 22 6 7.6703 0.8399 3.0465 23 6 8.3424 0.4217 1.7317 24 8 7.6783 -0.7476 1.2403 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.1076 -2.8136 0.8943 33 1 -1.6697 -4.8889 2.2322 34 1 3.6943 -2.3551 -0.1218 35 1 6.1547 -2.3620 -0.1262 36 1 3.6961 0.9182 2.6110 37 1 8.1517 1.7367 3.4365 38 1 7.7515 0.0324 3.7740 39 1 8.2560 1.2272 1.0023 40 1 9.3941 0.1990 1.9113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120135732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:56 Heat of formation + Delta-G solvation = -39.015931 kcal Electronic energy + Delta-G solvation = -22037.233755 eV Core-core repulsion = 18817.923556 eV Total energy + Delta-G solvation = -3219.310199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19845 -38.61742 -37.22145 -35.96169 -33.07346 -31.46034 -30.68705 -30.49896 -28.53670 -26.30547 -25.74910 -24.39255 -22.51088 -22.13397 -20.61890 -19.30049 -18.68273 -17.63207 -17.17188 -16.82373 -15.41695 -15.15761 -14.89166 -14.61527 -14.41726 -14.01358 -13.98163 -13.72284 -13.62622 -13.08159 -12.74454 -12.47637 -12.19233 -11.85332 -11.57866 -11.37483 -11.24523 -11.13407 -10.94723 -10.81053 -10.55963 -10.41589 -10.17342 -10.12379 -9.94954 -9.44878 -8.89487 -8.41221 -7.83603 -7.26066 -5.76051 -3.10751 1.48452 1.49277 3.00603 3.19737 3.37853 3.41618 3.46931 3.89273 4.12302 4.60079 4.63373 4.69704 4.72777 5.03250 5.16581 5.25928 5.27916 5.43867 5.48622 5.56006 5.59259 5.67502 5.77769 5.93903 6.06844 6.20647 6.25101 6.31202 6.35095 6.44987 6.53365 6.59484 6.77156 6.82098 6.86891 6.93637 7.13421 7.38940 7.48572 8.00451 8.42511 9.20581 9.93017 10.12705 11.41820 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.005388 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.219965 B = 5195.817582 C = 5924.588913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.146 4.146 4 C 0.225 3.775 5 H 0.066 0.934 6 N -0.744 5.744 7 C -0.237 4.237 8 H 0.095 0.905 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.878 3.122 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 C -0.058 4.058 16 C -0.108 4.108 17 C -0.112 4.112 18 C 0.034 3.966 19 C 0.048 3.952 20 C -0.106 4.106 21 O -0.309 6.309 22 C 0.021 3.979 23 C 0.022 3.978 24 O -0.311 6.311 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.948 10.685 -2.446 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.115 3.885 5 H 0.084 0.916 6 N -0.387 5.387 7 C -0.367 4.367 8 H 0.113 0.887 9 C -0.190 4.190 10 N -0.580 5.580 11 Si 0.709 3.291 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 C -0.059 4.059 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.010 4.010 19 C 0.004 3.996 20 C -0.126 4.126 21 O -0.224 6.224 22 C -0.055 4.055 23 C -0.054 4.054 24 O -0.226 6.226 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.196 0.804 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.747 10.694 -2.302 20.847 hybrid contribution 0.983 -1.020 -0.385 1.468 sum 18.730 9.674 -2.687 21.251 Atomic orbital electron populations 1.21849 0.94443 1.04268 0.99221 1.21727 0.96968 0.94607 0.99371 1.21886 1.00496 0.97102 1.00907 1.19207 0.85567 0.87198 0.96521 0.91617 1.42863 1.18388 1.02470 1.74938 1.19063 0.91101 0.94188 1.32325 0.88699 1.24633 0.96466 0.96803 1.01069 1.69687 1.17748 1.19111 1.51461 0.86649 0.80226 0.83204 0.79065 1.21113 1.21790 1.20311 1.20169 0.97285 0.93707 0.94751 1.20818 0.92504 0.99344 0.99977 1.20378 0.93677 0.99479 0.99486 1.18795 0.82324 0.99993 0.99916 1.18816 0.92190 0.93417 0.95213 1.20283 0.89800 1.00800 1.01669 1.86300 1.23439 1.44780 1.67855 1.23570 0.81186 1.03666 0.97060 1.23555 0.97681 0.88395 0.95789 1.86280 1.16046 1.38713 1.81561 0.93729 0.94982 0.89259 0.92105 0.93182 0.93609 0.93090 0.80439 0.93079 0.85097 0.85188 0.84863 0.86419 0.90683 0.90786 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.26 37.16 0.31 -2.31 16 2 C -0.11 -1.82 2.68 -90.62 -0.24 -2.07 16 3 C -0.15 -2.13 8.78 37.16 0.33 -1.80 16 4 C 0.22 4.26 2.23 -69.08 -0.15 4.11 16 5 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 6 N -0.74 -16.96 4.75 -54.55 -0.26 -17.22 16 7 C -0.24 -6.36 8.05 -15.06 -0.12 -6.49 16 8 H 0.10 2.71 7.62 -52.49 -0.40 2.31 16 9 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 10 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 11 Si 0.88 21.83 27.74 -169.99 -4.71 17.11 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 15 C -0.06 -0.99 4.06 -104.63 -0.42 -1.41 16 16 C -0.11 -1.78 9.05 -39.59 -0.36 -2.13 16 17 C -0.11 -1.69 9.96 -39.43 -0.39 -2.08 16 18 C 0.03 0.52 6.49 -39.14 -0.25 0.26 16 19 C 0.05 0.74 6.49 -39.14 -0.25 0.48 16 20 C -0.11 -1.69 8.59 -39.42 -0.34 -2.03 16 21 O -0.31 -4.19 10.42 -32.88 -0.34 -4.54 16 22 C 0.02 0.19 7.26 37.40 0.27 0.47 16 23 C 0.02 0.20 7.26 37.40 0.27 0.47 16 24 O -0.31 -4.15 10.42 -32.86 -0.34 -4.49 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.97 6.01 -51.93 -0.31 1.66 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.71 6.62 -51.93 -0.34 0.37 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.36 8.18 3.92 -40.82 -0.16 8.02 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.13 2.17 6.91 -52.49 -0.36 1.81 16 35 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.13 1.97 8.04 -52.49 -0.42 1.55 16 37 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -31.26 319.40 -7.34 -38.60 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.81 Total: 8.07 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.46 Total: -14.45 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.52 Total: -45.11 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.69 Total: -9.03 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.26 -7.34 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120135732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.418 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds