Wall clock time and date at job start Mon Mar 30 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 H 1.09000 * 109.47050 * 299.99699 * 4 2 1 6 6 N 1.46500 * 109.47249 * 60.00049 * 4 2 1 7 7 C 1.36939 * 119.99555 * 274.99680 * 6 4 2 8 8 H 1.07999 * 120.00498 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99885 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00371 * 179.97438 * 9 7 6 11 11 Si 1.86810 * 119.99869 * 0.02562 * 9 7 6 12 12 H 1.48490 * 109.46935 * 89.99729 * 11 9 7 13 13 H 1.48496 * 109.46829 * 209.99889 * 11 9 7 14 14 H 1.48498 * 109.46724 * 329.99773 * 11 9 7 15 15 C 1.50699 * 109.46866 * 179.97438 * 4 2 1 16 16 C 1.38260 * 119.94428 * 280.00101 * 15 4 2 17 17 C 1.38191 * 120.11288 * 180.02562 * 16 15 4 18 18 C 1.38705 * 120.06944 * 0.02562 * 17 16 15 19 19 C 1.38967 * 119.81420 * 359.87716 * 18 17 16 20 20 C 1.38195 * 119.94321 * 99.72512 * 15 4 2 21 21 O 1.36110 * 120.78065 * 180.36949 * 19 18 17 22 22 C 1.43184 * 116.68984 * 342.51968 * 21 19 18 23 23 C 1.53472 * 108.23537 * 46.30806 * 22 21 19 24 24 O 1.36104 * 119.40243 * 179.65101 * 18 17 16 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 29 29 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 32 32 H 0.96998 * 120.00364 * 94.99433 * 6 4 2 33 33 H 0.96993 * 120.00193 * 180.02562 * 10 9 7 34 34 H 1.07994 * 119.93853 * 0.03808 * 16 15 4 35 35 H 1.08001 * 119.96550 * 180.02562 * 17 16 15 36 36 H 1.08001 * 119.96671 * 359.97438 * 20 15 4 37 37 H 1.08998 * 109.71180 * 165.99165 * 22 21 19 38 38 H 1.08992 * 109.71095 * 286.62143 * 22 21 19 39 39 H 1.09001 * 109.70283 * 59.98500 * 23 22 21 40 40 H 1.08991 * 109.70476 * 180.60767 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6765 -0.2074 2.1393 6 7 1.5515 -2.1025 1.2493 7 6 0.3099 -2.3896 1.7505 8 1 -0.3094 -1.5979 2.1454 9 6 -0.1531 -3.6983 1.7500 10 7 -1.3463 -3.9744 2.2322 11 14 0.9179 -5.0677 1.0663 12 1 1.7590 -5.6282 2.1541 13 1 0.0546 -6.1384 0.5064 14 1 1.7912 -4.5250 -0.0051 15 6 3.5469 -0.7219 1.2491 16 6 4.2365 -1.6400 0.4790 17 6 5.6184 -1.6440 0.4765 18 6 6.3174 -0.7269 1.2474 19 6 5.6242 0.1972 2.0198 20 6 4.2372 0.1990 2.0141 21 8 6.2902 1.1108 2.7778 22 6 7.6703 0.8399 3.0465 23 6 8.3424 0.4217 1.7317 24 8 7.6783 -0.7476 1.2403 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.1076 -2.8136 0.8943 33 1 -1.6697 -4.8889 2.2322 34 1 3.6943 -2.3551 -0.1218 35 1 6.1547 -2.3620 -0.1262 36 1 3.6961 0.9182 2.6110 37 1 8.1517 1.7367 3.4365 38 1 7.7515 0.0324 3.7740 39 1 8.2560 1.2272 1.0023 40 1 9.3941 0.1990 1.9113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120135732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:56 Heat of formation + Delta-G solvation = -58.513115 kcal Electronic energy + Delta-G solvation = -22038.079216 eV Core-core repulsion = 18817.923556 eV Total energy + Delta-G solvation = -3220.155661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22107 -39.92306 -38.20688 -37.35592 -34.92820 -32.98609 -31.97986 -31.77868 -29.69631 -27.67126 -27.19397 -25.57047 -23.89276 -23.68269 -21.76308 -20.71512 -19.97574 -19.24459 -18.20549 -17.96487 -16.71793 -16.42123 -16.20926 -15.92136 -15.68943 -15.40891 -15.25902 -14.88054 -14.80864 -14.60952 -14.21026 -13.84447 -13.60021 -13.28786 -12.97019 -12.93362 -12.69197 -12.54286 -12.31613 -12.02547 -11.96487 -11.86127 -11.79183 -11.53370 -11.37421 -11.32248 -10.88181 -9.58830 -9.27364 -8.97259 -7.95275 -5.26934 0.28686 0.30935 1.38843 1.41721 1.47998 2.06198 2.29936 2.52594 2.69061 3.32383 3.35702 3.64483 3.69761 3.84443 3.97522 4.09383 4.16007 4.24280 4.33006 4.36838 4.45202 4.54892 4.60949 4.64693 4.77275 4.90899 4.92243 5.01032 5.12035 5.13922 5.22118 5.24253 5.36931 5.53823 5.60750 5.71808 5.77232 5.86822 5.93221 6.28101 6.43775 7.13531 7.88339 8.08083 9.25956 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.005388 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.219965 B = 5195.817582 C = 5924.588913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 C -0.136 4.136 4 C 0.223 3.777 5 H 0.053 0.947 6 N -0.747 5.747 7 C -0.207 4.207 8 H 0.067 0.933 9 C -0.063 4.063 10 N -0.984 5.984 11 Si 0.938 3.062 12 H -0.285 1.285 13 H -0.299 1.299 14 H -0.250 1.250 15 C -0.071 4.071 16 C -0.118 4.118 17 C -0.113 4.113 18 C 0.036 3.964 19 C 0.047 3.953 20 C -0.112 4.112 21 O -0.322 6.322 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.322 6.322 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.365 0.635 33 H 0.255 0.745 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.375 11.901 -3.227 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 C -0.194 4.194 4 C 0.115 3.885 5 H 0.071 0.929 6 N -0.390 5.390 7 C -0.338 4.338 8 H 0.085 0.915 9 C -0.254 4.254 10 N -0.635 5.635 11 Si 0.767 3.233 12 H -0.212 1.212 13 H -0.226 1.226 14 H -0.174 1.174 15 C -0.072 4.072 16 C -0.136 4.136 17 C -0.132 4.132 18 C -0.009 4.009 19 C 0.002 3.998 20 C -0.131 4.131 21 O -0.237 6.237 22 C -0.062 4.062 23 C -0.059 4.059 24 O -0.237 6.237 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 21.242 11.965 -3.101 24.576 hybrid contribution 0.065 -1.212 -0.077 1.217 sum 21.307 10.752 -3.178 24.077 Atomic orbital electron populations 1.21747 0.95639 1.01791 1.00077 1.21598 0.95741 0.96466 0.98201 1.21778 1.00772 0.94885 1.01956 1.19296 0.87338 0.85057 0.96772 0.92947 1.42872 1.17009 1.04426 1.74667 1.18980 0.91888 0.93191 1.29746 0.91547 1.25321 0.97849 0.99377 1.02818 1.69855 1.20020 1.19254 1.54413 0.85647 0.78692 0.79961 0.79012 1.21183 1.22574 1.17447 1.19882 0.95708 0.95177 0.96395 1.20808 0.93263 0.99320 1.00235 1.20551 0.93201 0.99827 0.99588 1.18902 0.83398 0.99395 0.99231 1.18839 0.92098 0.93579 0.95293 1.20307 0.90496 1.00776 1.01522 1.86280 1.25673 1.44390 1.67380 1.23975 0.79155 1.05712 0.97347 1.23956 0.99067 0.87382 0.95544 1.86265 1.14925 1.40833 1.81718 0.94322 0.92674 0.93277 0.92127 0.92605 0.91917 0.92686 0.80114 0.93641 0.85524 0.83345 0.84418 0.82671 0.90634 0.90054 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.26 71.98 0.59 -4.45 16 2 C -0.10 -3.36 2.68 -10.79 -0.03 -3.39 16 3 C -0.14 -3.70 8.78 71.98 0.63 -3.07 16 4 C 0.22 8.47 2.23 44.25 0.10 8.57 16 5 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 6 N -0.75 -34.23 4.75 -326.49 -1.55 -35.78 16 7 C -0.21 -11.44 8.05 84.03 0.68 -10.76 16 8 H 0.07 3.99 7.62 -2.91 -0.02 3.97 16 9 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 10 N -0.98 -62.85 13.97 21.65 0.30 -62.55 16 11 Si 0.94 45.65 27.74 68.60 1.90 47.55 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 14 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 15 C -0.07 -2.35 4.06 -19.87 -0.08 -2.43 16 16 C -0.12 -3.71 9.05 22.26 0.20 -3.51 16 17 C -0.11 -3.19 9.96 22.37 0.22 -2.96 16 18 C 0.04 0.99 6.49 22.56 0.15 1.14 16 19 C 0.05 1.34 6.49 22.56 0.15 1.49 16 20 C -0.11 -3.42 8.59 22.37 0.19 -3.23 16 21 O -0.32 -7.92 10.42 -82.57 -0.86 -8.78 16 22 C 0.01 0.19 7.26 72.14 0.52 0.71 16 23 C 0.02 0.21 7.26 72.14 0.52 0.74 16 24 O -0.32 -7.59 10.42 -82.50 -0.86 -8.45 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.05 2.22 6.01 -2.39 -0.01 2.21 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 1.47 6.62 -2.39 -0.02 1.45 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.36 16.26 3.92 -92.71 -0.36 15.90 16 33 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.13 4.03 6.91 -2.91 -0.02 4.01 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.14 3.96 8.04 -2.91 -0.02 3.94 16 37 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.30 319.40 3.86 -65.43 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.61 Total: 26.94 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 4.32 Total: -24.35 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -1.25 Total: -98.34 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.72 Total: -17.24 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -69.30 3.86 -65.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120135732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.919 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds