Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 H 1.09004 * 109.46830 * 304.99600 * 3 2 1 5 5 C 1.52992 * 109.47210 * 65.00022 * 3 2 1 6 6 C 1.50706 * 109.46798 * 185.00261 * 3 2 1 7 7 C 1.38163 * 120.02719 * 299.97175 * 6 3 2 8 8 C 1.38243 * 120.05442 * 180.02562 * 7 6 3 9 9 C 1.38289 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38125 * 120.05159 * 359.97438 * 9 8 7 11 11 C 1.38708 * 120.02782 * 119.99961 * 6 3 2 12 12 O 1.35898 * 120.05505 * 359.97438 * 11 6 3 13 13 C 1.42904 * 116.99940 * 179.97438 * 12 11 6 14 14 C 1.50706 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21289 * 120.00043 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99995 * 179.97438 * 14 13 12 17 17 C 1.37090 * 119.99863 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00617 * 0.02562 * 17 16 14 19 19 C 1.38958 * 119.99816 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00095 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99729 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47539 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47272 * 120.00263 * 21 19 17 24 24 H 1.48504 * 109.46953 * 239.99678 * 21 19 17 25 25 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47095 * 299.99737 * 1 2 3 27 27 H 1.08995 * 109.47570 * 60.00195 * 1 2 3 28 28 H 1.09001 * 109.47430 * 239.99845 * 2 1 3 29 29 H 1.09007 * 109.47183 * 119.99817 * 2 1 3 30 30 H 1.09004 * 109.47569 * 60.00031 * 5 3 2 31 31 H 1.09005 * 109.47188 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47623 * 300.00190 * 5 3 2 33 33 H 1.08001 * 119.97035 * 0.03182 * 7 6 3 34 34 H 1.08004 * 119.94085 * 180.02562 * 8 7 6 35 35 H 1.07993 * 119.96940 * 180.27537 * 9 8 7 36 36 H 1.08000 * 120.02369 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47040 * 299.99833 * 13 12 11 38 38 H 1.08995 * 109.47340 * 59.99861 * 13 12 11 39 39 H 0.97006 * 119.99880 * 0.02562 * 16 14 13 40 40 H 0.96997 * 119.99697 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.3154 0.8176 0.8342 8 6 5.6932 0.8193 0.7214 9 6 6.3009 1.4483 -0.3498 10 6 5.5320 2.0762 -1.3103 11 6 4.1489 2.0755 -1.1996 12 8 3.3903 2.6926 -2.1432 13 6 4.0832 3.3226 -3.2226 14 6 3.0855 3.9485 -4.1629 15 8 1.8980 3.8639 -3.9312 16 7 3.5129 4.6032 -5.2607 17 6 2.6053 5.1730 -6.1157 18 1 1.5479 5.0976 -5.9094 19 6 3.0460 5.8475 -7.2478 20 7 4.3326 5.9396 -7.4986 21 14 1.8094 6.6245 -8.4124 22 1 0.4339 6.3814 -7.9083 23 1 2.0563 8.0866 -8.4932 24 1 1.9548 6.0228 -9.7623 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.0698 1.5876 2.1492 31 1 1.9982 3.1544 1.3071 32 1 0.5489 2.1252 1.3970 33 1 3.8432 0.3259 1.6719 34 1 6.2961 0.3285 1.4711 35 1 7.3772 1.4444 -0.4380 36 1 6.0070 2.5670 -2.1469 37 1 4.7451 4.0938 -2.8286 38 1 4.6714 2.5789 -3.7601 39 1 4.4627 4.6712 -5.4458 40 1 4.6401 6.4108 -8.2887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126798360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -69.950398 kcal Electronic energy + Delta-G solvation = -21126.705504 eV Core-core repulsion = 17906.053886 eV Total energy + Delta-G solvation = -3220.651618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26782 -38.39349 -37.03413 -35.92767 -34.00207 -31.40204 -31.10684 -30.01989 -28.79739 -27.76404 -24.76462 -24.65681 -22.62136 -21.76861 -19.86120 -19.32327 -18.12492 -17.83460 -16.18781 -15.81884 -15.76753 -15.41062 -14.70785 -14.47413 -14.39910 -13.99586 -13.89073 -13.62200 -13.27978 -12.95784 -12.69754 -12.25185 -12.05538 -11.98147 -11.78243 -11.61411 -11.60199 -11.25614 -11.17081 -10.73439 -10.67838 -10.42629 -10.38703 -10.31315 -10.28460 -9.61090 -8.76913 -8.48840 -8.07648 -7.96286 -6.50022 -3.91518 1.38424 1.54662 3.11930 3.21380 3.26315 3.36994 3.74440 3.83400 4.16158 4.68982 4.78550 4.95547 5.07596 5.12589 5.14130 5.15120 5.19867 5.36755 5.44356 5.54413 5.57447 5.64616 5.67066 5.69124 5.71812 5.95187 6.02739 6.07850 6.08577 6.10651 6.22600 6.34399 6.40885 6.49192 6.56800 6.72583 6.88482 7.48395 7.62006 7.95782 8.49844 9.08274 9.40416 9.90934 10.67523 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.003913 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.556120 B = 7153.109165 C = 8188.852121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.052 4.052 4 H 0.094 0.906 5 C -0.141 4.141 6 C -0.108 4.108 7 C -0.080 4.080 8 C -0.165 4.165 9 C -0.085 4.085 10 C -0.212 4.212 11 C 0.138 3.862 12 O -0.281 6.281 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.573 6.573 16 N -0.555 5.555 17 C -0.301 4.301 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.899 5.899 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.394 0.606 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -9.695 14.969 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.071 4.071 4 H 0.113 0.887 5 C -0.198 4.198 6 C -0.108 4.108 7 C -0.098 4.098 8 C -0.184 4.184 9 C -0.103 4.103 10 C -0.230 4.230 11 C 0.092 3.908 12 O -0.192 6.192 13 C -0.028 4.028 14 C 0.226 3.774 15 O -0.457 6.457 16 N -0.193 5.193 17 C -0.430 4.430 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.540 5.540 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.053 -9.631 14.942 17.896 hybrid contribution 0.571 0.518 -0.894 1.181 sum 2.624 -9.113 14.048 16.949 Atomic orbital electron populations 1.21832 0.95817 1.01259 1.02238 1.21544 0.95796 0.95850 1.01681 1.20069 0.90416 0.96768 0.99821 0.88749 1.21860 1.01156 1.00497 0.96269 1.19223 0.96084 1.01340 0.94182 1.20771 0.93353 0.97942 0.97722 1.20954 0.94657 1.03298 0.99470 1.20885 0.99436 0.96313 0.93693 1.21317 0.92766 1.06424 1.02521 1.19013 0.89700 0.92701 0.89406 1.86184 1.33947 1.66511 1.32599 1.22505 0.95444 0.97077 0.87790 1.19319 0.89013 0.85112 0.83980 1.90564 1.16765 1.63241 1.75103 1.41703 1.09996 1.47466 1.20098 1.19774 0.91294 1.30094 1.01815 0.87618 1.25292 0.96811 0.97559 0.98097 1.69615 1.13232 1.42777 1.28355 0.85758 0.80380 0.78513 0.79468 1.19090 1.20626 1.20631 0.93082 0.92608 0.92267 0.92012 0.92354 0.93013 0.92679 0.92259 0.85829 0.86354 0.86128 0.85336 0.90521 0.90528 0.77283 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.11 -1.31 5.14 -26.73 -0.14 -1.45 16 3 C -0.05 -0.72 2.52 -91.77 -0.23 -0.95 16 4 H 0.09 1.60 6.99 -51.93 -0.36 1.24 16 5 C -0.14 -1.64 8.76 37.15 0.33 -1.32 16 6 C -0.11 -1.53 4.79 -104.47 -0.50 -2.04 16 7 C -0.08 -0.94 8.76 -39.61 -0.35 -1.29 16 8 C -0.17 -1.84 10.04 -39.56 -0.40 -2.24 16 9 C -0.09 -1.00 10.04 -39.60 -0.40 -1.40 16 10 C -0.21 -2.93 9.04 -39.43 -0.36 -3.29 16 11 C 0.14 2.23 6.66 -39.22 -0.26 1.96 16 12 O -0.28 -5.40 8.44 -39.33 -0.33 -5.73 16 13 C 0.05 0.94 5.22 36.01 0.19 1.13 16 14 C 0.44 10.66 7.86 -10.98 -0.09 10.57 16 15 O -0.57 -16.17 16.07 -14.36 -0.23 -16.41 16 16 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 18 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 21 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.59 7.57 -51.92 -0.39 0.20 16 30 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 6.57 -51.93 -0.34 0.29 16 33 H 0.12 1.19 7.16 -52.49 -0.38 0.81 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 37 H 0.08 1.24 7.66 -51.93 -0.40 0.84 16 38 H 0.08 1.24 7.66 -51.93 -0.40 0.84 16 39 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -31.24 333.33 -7.67 -38.92 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.69 Total: 9.31 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.08 Total: -9.52 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.67 Total: -37.32 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.56 Total: -22.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.24 -7.67 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126798360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.032 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds