Wall clock time and date at job start Mon Mar 30 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46973 * 2 1 4 4 H 1.08997 * 109.46927 * 54.99834 * 3 2 1 5 5 C 1.53001 * 109.46913 * 294.99867 * 3 2 1 6 6 C 1.50693 * 109.46795 * 174.99644 * 3 2 1 7 7 C 1.38169 * 120.02813 * 60.00183 * 6 3 2 8 8 C 1.38243 * 120.05455 * 179.97438 * 7 6 3 9 9 C 1.38295 * 120.11401 * 0.04496 * 8 7 6 10 10 C 1.38122 * 120.05026 * 359.97438 * 9 8 7 11 11 C 1.38712 * 120.02675 * 239.97416 * 6 3 2 12 12 O 1.35897 * 120.05621 * 0.04919 * 11 6 3 13 13 C 1.42904 * 116.99781 * 179.97438 * 12 11 6 14 14 C 1.50703 * 109.46628 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00434 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99919 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99919 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00070 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99740 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00153 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00250 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47121 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47174 * 119.99694 * 21 19 17 24 24 H 1.48496 * 109.47352 * 239.99769 * 21 19 17 25 25 H 1.08995 * 109.47218 * 300.00131 * 1 2 3 26 26 H 1.09004 * 109.46580 * 60.00591 * 1 2 3 27 27 H 1.08994 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47218 * 239.99869 * 2 1 3 29 29 H 1.08997 * 109.47236 * 119.99366 * 2 1 3 30 30 H 1.08997 * 109.47191 * 59.99843 * 5 3 2 31 31 H 1.09002 * 109.46892 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.46844 * 300.00024 * 5 3 2 33 33 H 1.07998 * 119.97356 * 359.97438 * 7 6 3 34 34 H 1.07997 * 119.94707 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.97026 * 179.70067 * 9 8 7 36 36 H 1.08002 * 120.02294 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47145 * 299.99865 * 13 12 11 38 38 H 1.08996 * 109.47124 * 60.00356 * 13 12 11 39 39 H 0.97000 * 119.99786 * 0.02562 * 16 14 13 40 40 H 0.96994 * 120.00557 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5419 1.4444 0.1239 7 6 4.3154 0.8172 -0.8339 8 6 5.6932 0.8190 -0.7210 9 6 6.3008 1.4472 0.3507 10 6 5.5319 2.0752 1.3110 11 6 4.1489 2.0761 1.1994 12 8 3.3902 2.6932 2.1429 13 6 4.0831 3.3227 3.2226 14 6 3.0854 3.9487 4.1627 15 8 1.8978 3.8645 3.9307 16 7 3.5127 4.6031 5.2608 17 6 2.6050 5.1721 6.1163 18 1 1.5476 5.0964 5.9101 19 6 3.0456 5.8471 7.2481 20 7 4.3323 5.9397 7.4987 21 14 1.8090 6.6231 8.4134 22 1 0.4335 6.3797 7.9093 23 1 1.9557 6.0215 9.7632 24 1 2.0546 8.0854 8.4938 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 0.5490 2.1252 -1.3970 31 1 1.9990 3.1541 -1.3076 32 1 2.0699 1.5875 -2.1491 33 1 3.8433 0.3253 -1.6714 34 1 6.2962 0.3286 -1.4709 35 1 7.3772 1.4430 0.4391 36 1 6.0068 2.5654 2.1480 37 1 4.6709 2.5787 3.7601 38 1 4.7453 4.0938 2.8290 39 1 4.4624 4.6714 5.4458 40 1 4.6399 6.4112 8.2885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126798553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:16 Heat of formation + Delta-G solvation = -87.939922 kcal Electronic energy + Delta-G solvation = -21127.469343 eV Core-core repulsion = 17906.037640 eV Total energy + Delta-G solvation = -3221.431703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44338 -40.12387 -38.42055 -36.90328 -36.06084 -33.43181 -32.10040 -31.11701 -29.95035 -29.11085 -26.59894 -25.69125 -23.71060 -22.80630 -21.41479 -20.63791 -20.06271 -19.11088 -17.77613 -17.23362 -17.14961 -16.58675 -16.42333 -15.82901 -15.50641 -15.35680 -15.22123 -14.94552 -14.64389 -14.32789 -13.77900 -13.58506 -13.51045 -13.22122 -13.00291 -12.92383 -12.70037 -12.59402 -12.48832 -12.21065 -12.12801 -12.02745 -11.63212 -11.60636 -11.46397 -11.27281 -10.48849 -10.12733 -9.72696 -9.04847 -8.54376 -6.04588 0.42399 0.53698 1.32917 1.40506 1.54360 1.86564 1.91657 2.34076 2.85596 3.11246 3.23684 3.69850 3.87940 3.90587 4.12175 4.16308 4.19262 4.23464 4.27279 4.36089 4.48571 4.56807 4.61694 4.72055 4.76350 4.77543 5.04972 5.09985 5.12702 5.15706 5.27177 5.35009 5.38956 5.46792 5.53768 5.62879 5.68287 5.84715 5.95491 6.40807 6.53783 7.02268 7.39271 7.94415 8.63003 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.003913 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.546824 B = 7153.175314 C = 8188.854022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.053 4.053 4 H 0.046 0.954 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.155 4.155 9 C -0.087 4.087 10 C -0.219 4.219 11 C 0.098 3.902 12 O -0.314 6.314 13 C 0.066 3.934 14 C 0.434 3.566 15 O -0.623 6.623 16 N -0.558 5.558 17 C -0.339 4.339 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.914 5.914 21 Si 0.996 3.004 22 H -0.274 1.274 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.401 0.599 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -10.709 -16.483 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.072 4.072 4 H 0.065 0.935 5 C -0.192 4.192 6 C -0.123 4.123 7 C -0.097 4.097 8 C -0.173 4.173 9 C -0.105 4.105 10 C -0.238 4.238 11 C 0.053 3.947 12 O -0.228 6.228 13 C -0.013 4.013 14 C 0.221 3.779 15 O -0.510 6.510 16 N -0.196 5.196 17 C -0.468 4.468 18 H 0.098 0.902 19 C -0.207 4.207 20 N -0.554 5.554 21 Si 0.819 3.181 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.235 0.765 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.749 -10.650 -16.459 19.960 hybrid contribution 0.124 0.780 1.285 1.508 sum 3.873 -9.870 -15.175 18.512 Atomic orbital electron populations 1.21828 0.95353 1.02155 1.01687 1.21514 0.96205 0.94531 1.02083 1.20010 0.90533 0.97596 0.99021 0.93498 1.21825 1.01734 0.99688 0.95984 1.19482 0.96444 1.01769 0.94563 1.21092 0.93825 0.97182 0.97558 1.21419 0.94610 1.01789 0.99486 1.21279 1.00835 0.95340 0.93069 1.21513 0.91934 1.06830 1.03532 1.19389 0.90783 0.94702 0.89873 1.86132 1.35468 1.67702 1.33448 1.22268 0.93464 0.98189 0.87330 1.20299 0.89464 0.84046 0.84060 1.90523 1.19364 1.64827 1.76249 1.41720 1.09976 1.47585 1.20270 1.19719 0.90796 1.32588 1.03709 0.90243 1.26076 0.98754 0.97112 0.98773 1.69661 1.14313 1.42529 1.28937 0.84832 0.77605 0.78133 0.77531 1.19878 1.19262 1.19270 0.94709 0.91296 0.91417 0.89644 0.93693 0.91597 0.94238 0.90397 0.83087 0.82873 0.83233 0.84681 0.88051 0.88028 0.76483 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.67 71.98 0.70 -2.60 16 2 C -0.11 -2.44 5.14 30.60 0.16 -2.28 16 3 C -0.05 -1.48 2.53 -11.54 -0.03 -1.51 16 4 H 0.05 1.74 6.99 -2.39 -0.02 1.73 16 5 C -0.14 -3.07 8.76 71.98 0.63 -2.44 16 6 C -0.12 -3.43 4.79 -19.77 -0.09 -3.52 16 7 C -0.08 -1.64 8.76 22.25 0.19 -1.44 16 8 C -0.16 -2.83 10.04 22.28 0.22 -2.60 16 9 C -0.09 -1.78 10.04 22.26 0.22 -1.56 16 10 C -0.22 -5.81 9.04 22.37 0.20 -5.61 16 11 C 0.10 3.18 6.66 22.51 0.15 3.33 16 12 O -0.31 -12.71 8.44 -73.36 -0.62 -13.33 16 13 C 0.07 2.50 5.22 71.24 0.37 2.87 16 14 C 0.43 22.01 7.86 87.66 0.69 22.70 16 15 O -0.62 -37.46 16.07 15.97 0.26 -37.20 16 16 N -0.56 -29.11 5.29 -306.98 -1.62 -30.73 16 17 C -0.34 -19.45 9.68 84.04 0.81 -18.64 16 18 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 19 C -0.01 -0.34 5.50 84.93 0.47 0.13 16 20 N -0.91 -48.58 13.05 21.66 0.28 -48.30 16 21 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.29 6.57 -2.38 -0.02 1.27 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.50 7.57 -2.39 -0.02 1.48 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.38 6.56 -2.39 -0.02 1.36 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.34 7.39 -2.39 -0.02 1.32 16 33 H 0.15 2.24 7.16 -2.91 -0.02 2.22 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.14 3.24 6.30 -2.91 -0.02 3.22 16 37 H 0.10 3.28 7.66 -2.39 -0.02 3.26 16 38 H 0.10 3.29 7.66 -2.39 -0.02 3.27 16 39 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 40 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -71.28 333.33 5.33 -65.94 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.31 Total: 32.15 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 4.70 Total: -13.18 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.34 Total: -79.03 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.36 Total: -50.53 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.28 5.33 -65.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126798553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.996 kcal (2) G-P(sol) polarization free energy of solvation -71.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds