Wall clock time and date at job start Mon Mar 30 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46779 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99581 * 2 1 3 5 5 C 1.53002 * 109.46969 * 65.00294 * 4 2 1 6 6 O 1.42905 * 109.47079 * 179.97438 * 5 4 2 7 7 C 1.35713 * 116.99825 * 179.97438 * 6 5 4 8 8 C 1.39017 * 119.90551 * 359.72790 * 7 6 5 9 9 C 1.37688 * 120.09109 * 179.76045 * 8 7 6 10 10 C 1.39796 * 119.90565 * 0.53449 * 9 8 7 11 11 C 1.47497 * 120.09597 * 179.69477 * 10 9 8 12 12 O 1.21613 * 120.00416 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99628 * 0.02562 * 11 10 9 14 14 C 1.36904 * 119.99749 * 179.97438 * 13 11 10 15 15 H 1.07992 * 120.00223 * 359.97438 * 14 13 11 16 16 C 1.39032 * 119.99716 * 180.02562 * 14 13 11 17 17 N 1.31380 * 119.99476 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 119.99979 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 90.00518 * 18 16 14 20 20 H 1.48503 * 109.47050 * 210.00341 * 18 16 14 21 21 H 1.48498 * 109.47550 * 330.00168 * 18 16 14 22 22 C 1.39795 * 119.81260 * 359.72266 * 10 9 8 23 23 C 1.37683 * 119.90575 * 359.97438 * 22 10 9 24 24 H 1.09000 * 109.47607 * 299.99935 * 1 2 3 25 25 H 1.09002 * 109.47074 * 60.00287 * 1 2 3 26 26 H 1.09006 * 109.46661 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47270 * 240.00037 * 2 1 3 28 28 H 1.08998 * 109.47077 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47083 * 299.99708 * 3 2 1 30 30 H 1.09006 * 109.47416 * 59.99832 * 3 2 1 31 31 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 32 32 H 1.09004 * 109.47552 * 185.00387 * 4 2 1 33 33 H 1.09004 * 109.46930 * 59.99996 * 5 4 2 34 34 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 35 35 H 1.07997 * 119.95397 * 359.97438 * 8 7 6 36 36 H 1.08003 * 120.04482 * 180.22802 * 9 8 7 37 37 H 0.97004 * 120.00243 * 359.97438 * 13 11 10 38 38 H 0.97005 * 119.99612 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.04868 * 179.97438 * 22 10 9 40 40 H 1.08008 * 119.95349 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1880 6 8 2.1121 -2.8691 2.3546 7 6 1.8353 -4.1937 2.4575 8 6 1.1125 -4.8306 1.4552 9 6 0.8337 -6.1754 1.5532 10 6 1.2690 -6.8980 2.6680 11 6 0.9669 -8.3373 2.7806 12 8 1.3459 -8.9641 3.7514 13 7 0.2707 -8.9578 1.8076 14 6 -0.0092 -10.2938 1.9118 15 1 0.3281 -10.8506 2.7734 16 6 -0.7269 -10.9340 0.9077 17 7 -0.9951 -12.2162 1.0075 18 14 -1.3097 -9.9710 -0.5830 19 1 -0.2683 -10.0176 -1.6405 20 1 -2.5665 -10.5705 -1.0991 21 1 -1.5578 -8.5594 -0.1944 22 6 1.9909 -6.2524 3.6762 23 6 2.2707 -4.9087 3.5672 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3003 34 1 0.5489 -2.2724 1.1421 35 1 0.7722 -4.2706 0.5968 36 1 0.2753 -6.6703 0.7724 37 1 -0.0319 -8.4577 1.0334 38 1 -1.4962 -12.6629 0.3072 39 1 2.3286 -6.8068 4.5393 40 1 2.8288 -4.4092 4.3455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126875489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:04 Heat of formation + Delta-G solvation = -66.955062 kcal Electronic energy + Delta-G solvation = -20506.749347 eV Core-core repulsion = 17286.227616 eV Total energy + Delta-G solvation = -3220.521731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17296 -38.69915 -37.23910 -36.22822 -34.11546 -31.94795 -30.97951 -30.42930 -29.19326 -27.58432 -25.28258 -24.12771 -22.78653 -21.68901 -20.36609 -19.54053 -18.80956 -18.04768 -16.45464 -16.34952 -15.94810 -15.17700 -14.95744 -14.62510 -14.29660 -14.05157 -13.75302 -13.60548 -13.37597 -13.23804 -12.86487 -12.80792 -12.56056 -12.35564 -12.02630 -11.91095 -11.83691 -11.33869 -11.25283 -11.17163 -11.08201 -10.70432 -10.66928 -10.59822 -10.04409 -9.66736 -8.87652 -8.63535 -8.28123 -7.99942 -6.43079 -3.87599 1.30591 1.53621 2.96470 3.01037 3.06558 3.08842 3.53742 4.01010 4.39519 4.42093 4.42505 4.54218 4.58871 4.78950 4.86898 4.92949 5.06408 5.08615 5.22334 5.24514 5.24833 5.39380 5.44695 5.48842 5.51459 5.59615 5.61298 5.71360 5.76852 5.90474 5.91081 5.96052 6.15204 6.35997 6.50334 6.75482 6.88753 7.42710 7.49310 8.07381 8.50758 8.85438 9.32433 9.77692 10.69121 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003468 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.179205 B = 8072.091788 C = 9197.182272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.114 4.114 5 C 0.056 3.944 6 O -0.316 6.316 7 C 0.128 3.872 8 C -0.212 4.212 9 C -0.068 4.068 10 C -0.133 4.133 11 C 0.482 3.518 12 O -0.580 6.580 13 N -0.574 5.574 14 C -0.300 4.300 15 H 0.124 0.876 16 C 0.042 3.958 17 N -0.870 5.870 18 Si 0.877 3.123 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.268 1.268 22 C -0.035 4.035 23 C -0.156 4.156 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.371 0.629 38 H 0.276 0.724 39 H 0.141 0.859 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 25.484 -4.737 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.019 4.019 6 O -0.230 6.230 7 C 0.083 3.917 8 C -0.230 4.230 9 C -0.088 4.088 10 C -0.137 4.137 11 C 0.271 3.729 12 O -0.465 6.465 13 N -0.211 5.211 14 C -0.428 4.428 15 H 0.141 0.859 16 C -0.162 4.162 17 N -0.508 5.508 18 Si 0.703 3.297 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.194 1.194 22 C -0.054 4.054 23 C -0.175 4.175 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.205 0.795 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.658 24.948 -4.070 25.541 hybrid contribution -0.765 0.497 -1.574 1.819 sum 2.893 25.445 -5.644 26.224 Atomic orbital electron populations 1.21954 0.94985 1.02112 1.02078 1.21048 0.96130 0.96446 0.97666 1.21821 1.01102 0.95475 1.01980 1.21609 1.02167 0.92485 0.98901 1.22894 0.99198 0.92747 0.87045 1.85975 1.74476 1.19453 1.43126 1.19103 0.95269 0.82559 0.94802 1.21058 1.05600 0.95979 1.00412 1.21125 0.97364 0.93354 0.96913 1.20249 1.02249 0.95202 0.95987 1.17519 0.84464 0.85924 0.85043 1.90635 1.56919 1.66608 1.32363 1.42199 1.48841 1.10325 1.19718 1.19538 1.32239 0.82574 1.08490 0.85861 1.25104 0.97208 0.95745 0.98161 1.69607 1.38308 1.08675 1.34237 0.86697 0.79775 0.79945 0.83278 1.19252 1.19778 1.19374 1.21063 0.93874 0.92570 0.97917 1.20342 1.05451 0.93852 0.97839 0.92388 0.92488 0.92387 0.90881 0.92513 0.92462 0.92501 0.90761 0.90786 0.92087 0.91783 0.85617 0.85948 0.79500 0.91310 0.84089 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.95 37.16 0.33 -0.61 16 2 C -0.09 -0.58 2.92 -90.62 -0.26 -0.85 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.45 16 4 C -0.11 -0.86 5.05 -26.73 -0.14 -0.99 16 5 C 0.06 0.53 4.49 37.16 0.17 0.70 16 6 O -0.32 -4.01 10.12 -18.84 -0.19 -4.20 16 7 C 0.13 1.83 6.70 -39.01 -0.26 1.57 16 8 C -0.21 -2.99 9.01 -39.49 -0.36 -3.34 16 9 C -0.07 -1.13 9.53 -39.20 -0.37 -1.50 16 10 C -0.13 -2.59 5.88 -104.96 -0.62 -3.21 16 11 C 0.48 11.75 7.71 -12.49 -0.10 11.66 16 12 O -0.58 -16.27 15.91 5.27 0.08 -16.19 16 13 N -0.57 -14.19 5.03 -11.94 -0.06 -14.25 16 14 C -0.30 -8.53 10.16 -14.99 -0.15 -8.69 16 15 H 0.12 3.98 7.38 -52.49 -0.39 3.59 16 16 C 0.04 1.15 5.50 -17.45 -0.10 1.06 16 17 N -0.87 -25.03 13.96 55.50 0.77 -24.26 16 18 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 22 C -0.03 -0.60 9.59 -39.20 -0.38 -0.98 16 23 C -0.16 -2.31 9.97 -39.50 -0.39 -2.70 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 34 H 0.06 0.57 6.06 -51.93 -0.31 0.25 16 35 H 0.13 1.42 6.28 -52.49 -0.33 1.09 16 36 H 0.12 1.90 6.39 -52.48 -0.34 1.57 16 37 H 0.37 8.07 3.78 -40.82 -0.15 7.91 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.14 2.43 7.64 -52.49 -0.40 2.03 16 40 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -32.05 331.41 -7.03 -39.07 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.63 Total: 8.75 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -2.28 Total: -8.35 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.71 Total: -38.51 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.11 Total: -20.38 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.05 -7.03 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126875489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.881 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds