Wall clock time and date at job start Mon Mar 30 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46779 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99581 * 2 1 3 5 5 C 1.53002 * 109.46969 * 65.00294 * 4 2 1 6 6 O 1.42905 * 109.47079 * 179.97438 * 5 4 2 7 7 C 1.35713 * 116.99825 * 179.97438 * 6 5 4 8 8 C 1.39017 * 119.90551 * 359.72790 * 7 6 5 9 9 C 1.37688 * 120.09109 * 179.76045 * 8 7 6 10 10 C 1.39796 * 119.90565 * 0.53449 * 9 8 7 11 11 C 1.47497 * 120.09597 * 179.69477 * 10 9 8 12 12 O 1.21613 * 120.00416 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99628 * 0.02562 * 11 10 9 14 14 C 1.36904 * 119.99749 * 179.97438 * 13 11 10 15 15 H 1.07992 * 120.00223 * 359.97438 * 14 13 11 16 16 C 1.39032 * 119.99716 * 180.02562 * 14 13 11 17 17 N 1.31380 * 119.99476 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 119.99979 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 90.00518 * 18 16 14 20 20 H 1.48503 * 109.47050 * 210.00341 * 18 16 14 21 21 H 1.48498 * 109.47550 * 330.00168 * 18 16 14 22 22 C 1.39795 * 119.81260 * 359.72266 * 10 9 8 23 23 C 1.37683 * 119.90575 * 359.97438 * 22 10 9 24 24 H 1.09000 * 109.47607 * 299.99935 * 1 2 3 25 25 H 1.09002 * 109.47074 * 60.00287 * 1 2 3 26 26 H 1.09006 * 109.46661 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47270 * 240.00037 * 2 1 3 28 28 H 1.08998 * 109.47077 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47083 * 299.99708 * 3 2 1 30 30 H 1.09006 * 109.47416 * 59.99832 * 3 2 1 31 31 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 32 32 H 1.09004 * 109.47552 * 185.00387 * 4 2 1 33 33 H 1.09004 * 109.46930 * 59.99996 * 5 4 2 34 34 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 35 35 H 1.07997 * 119.95397 * 359.97438 * 8 7 6 36 36 H 1.08003 * 120.04482 * 180.22802 * 9 8 7 37 37 H 0.97004 * 120.00243 * 359.97438 * 13 11 10 38 38 H 0.97005 * 119.99612 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.04868 * 179.97438 * 22 10 9 40 40 H 1.08008 * 119.95349 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1880 6 8 2.1121 -2.8691 2.3546 7 6 1.8353 -4.1937 2.4575 8 6 1.1125 -4.8306 1.4552 9 6 0.8337 -6.1754 1.5532 10 6 1.2690 -6.8980 2.6680 11 6 0.9669 -8.3373 2.7806 12 8 1.3459 -8.9641 3.7514 13 7 0.2707 -8.9578 1.8076 14 6 -0.0092 -10.2938 1.9118 15 1 0.3281 -10.8506 2.7734 16 6 -0.7269 -10.9340 0.9077 17 7 -0.9951 -12.2162 1.0075 18 14 -1.3097 -9.9710 -0.5830 19 1 -0.2683 -10.0176 -1.6405 20 1 -2.5665 -10.5705 -1.0991 21 1 -1.5578 -8.5594 -0.1944 22 6 1.9909 -6.2524 3.6762 23 6 2.2707 -4.9087 3.5672 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3003 34 1 0.5489 -2.2724 1.1421 35 1 0.7722 -4.2706 0.5968 36 1 0.2753 -6.6703 0.7724 37 1 -0.0319 -8.4577 1.0334 38 1 -1.4962 -12.6629 0.3072 39 1 2.3286 -6.8068 4.5393 40 1 2.8288 -4.4092 4.3455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126875489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:04 Heat of formation + Delta-G solvation = -87.319759 kcal Electronic energy + Delta-G solvation = -20507.632426 eV Core-core repulsion = 17286.227616 eV Total energy + Delta-G solvation = -3221.404811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38066 -40.29950 -38.32838 -37.08925 -36.16970 -33.94222 -32.20791 -31.54309 -30.20540 -28.00932 -27.12777 -25.04257 -24.19092 -22.82601 -21.39355 -20.89354 -20.59732 -19.17956 -18.10961 -17.26521 -17.17937 -16.69169 -15.95851 -15.81607 -15.61214 -15.38109 -15.02050 -14.88430 -14.60579 -14.45676 -14.26463 -14.03836 -13.54800 -13.39462 -13.09969 -13.01397 -12.79065 -12.57768 -12.49208 -12.04220 -11.96782 -11.79212 -11.75039 -11.60716 -11.48580 -11.35272 -10.64302 -10.35153 -10.09804 -9.25792 -8.49615 -6.07649 -0.04499 0.32012 1.25090 1.33000 1.40271 1.96983 2.12976 2.17123 2.78468 2.82057 3.21988 3.69788 3.82657 3.89597 3.94022 4.01126 4.04441 4.22171 4.24231 4.36802 4.44099 4.50377 4.60665 4.78902 4.82925 4.92020 4.94613 5.00860 5.06290 5.11984 5.15147 5.22348 5.33777 5.37300 5.45490 5.50197 5.53523 5.65734 5.87957 6.38734 6.49526 6.76799 7.27435 7.83469 8.67343 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003468 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.179205 B = 8072.091788 C = 9197.182272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.110 4.110 5 C 0.046 3.954 6 O -0.319 6.319 7 C 0.146 3.854 8 C -0.203 4.203 9 C -0.060 4.060 10 C -0.169 4.169 11 C 0.484 3.516 12 O -0.630 6.630 13 N -0.574 5.574 14 C -0.333 4.333 15 H 0.060 0.940 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.958 3.042 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.233 1.233 22 C -0.039 4.039 23 C -0.155 4.155 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.389 0.611 38 H 0.283 0.717 39 H 0.129 0.871 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 29.843 -7.456 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.029 4.029 6 O -0.233 6.233 7 C 0.100 3.900 8 C -0.222 4.222 9 C -0.079 4.079 10 C -0.172 4.172 11 C 0.275 3.725 12 O -0.518 6.518 13 N -0.213 5.213 14 C -0.462 4.462 15 H 0.078 0.922 16 C -0.210 4.210 17 N -0.561 5.561 18 Si 0.777 3.223 19 H -0.175 1.175 20 H -0.191 1.191 21 H -0.156 1.156 22 C -0.058 4.058 23 C -0.174 4.174 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.226 0.774 38 H 0.093 0.907 39 H 0.147 0.853 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.276 29.348 -6.790 30.301 hybrid contribution -0.526 -0.653 -0.614 1.039 sum 2.750 28.696 -7.404 29.763 Atomic orbital electron populations 1.21973 0.94882 1.02122 1.02311 1.21033 0.96160 0.96658 0.97088 1.21825 1.01216 0.95113 1.02262 1.21607 1.02184 0.91435 0.99523 1.23246 1.00032 0.93388 0.86184 1.86007 1.74187 1.18323 1.44764 1.19234 0.93390 0.83366 0.94042 1.21364 1.04545 0.94913 1.01355 1.21247 0.96597 0.94269 0.95769 1.19889 1.06113 0.92278 0.98960 1.18451 0.82405 0.87969 0.83719 1.90591 1.58355 1.68549 1.34274 1.41930 1.49667 1.08963 1.20722 1.19086 1.34846 0.84411 1.07897 0.92199 1.26160 0.96223 0.96850 1.01783 1.69772 1.39276 1.11043 1.36045 0.85474 0.79447 0.79768 0.77649 1.17509 1.19075 1.15626 1.21036 0.93815 0.93761 0.97213 1.20489 1.05288 0.92667 0.98912 0.92577 0.91951 0.92442 0.90402 0.92382 0.91901 0.92561 0.91018 0.90835 0.90801 0.90649 0.81884 0.84624 0.77440 0.90698 0.85300 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.95 71.98 0.64 -0.75 16 2 C -0.09 -0.81 2.92 -10.79 -0.03 -0.84 16 3 C -0.15 -1.18 9.19 71.98 0.66 -0.52 16 4 C -0.11 -1.26 5.05 30.59 0.15 -1.10 16 5 C 0.05 0.65 4.49 71.98 0.32 0.97 16 6 O -0.32 -6.70 10.12 -90.34 -0.91 -7.61 16 7 C 0.15 3.59 6.70 22.64 0.15 3.75 16 8 C -0.20 -4.79 9.01 22.33 0.20 -4.59 16 9 C -0.06 -1.79 9.53 22.52 0.21 -1.58 16 10 C -0.17 -6.50 5.88 -20.08 -0.12 -6.62 16 11 C 0.48 24.50 7.71 86.68 0.67 25.17 16 12 O -0.63 -37.75 15.91 -4.07 -0.06 -37.81 16 13 N -0.57 -28.99 5.03 -309.93 -1.56 -30.55 16 14 C -0.33 -20.10 10.16 84.09 0.85 -19.25 16 15 H 0.06 4.26 7.38 -2.91 -0.02 4.24 16 16 C -0.01 -0.56 5.50 84.95 0.47 -0.09 16 17 N -0.92 -55.37 13.96 21.68 0.30 -55.07 16 18 Si 0.96 38.48 27.74 68.60 1.90 40.39 16 19 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.23 -7.93 6.52 99.48 0.65 -7.29 16 22 C -0.04 -1.33 9.59 22.52 0.22 -1.11 16 23 C -0.16 -4.19 9.97 22.32 0.22 -3.96 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.52 6.57 -2.38 -0.02 0.50 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.91 7.67 -2.38 -0.02 0.89 16 34 H 0.08 0.95 6.06 -2.39 -0.01 0.93 16 35 H 0.16 2.65 6.28 -2.91 -0.02 2.63 16 36 H 0.14 3.66 6.39 -2.91 -0.02 3.64 16 37 H 0.39 16.35 3.78 -92.71 -0.35 16.00 16 38 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.13 4.62 7.64 -2.91 -0.02 4.60 16 40 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -75.83 331.41 4.93 -70.90 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.63 Total: 30.29 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.63 Total: -10.53 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.26 Total: -85.62 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.98 Total: -45.43 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.39 kcal Total: -75.83 4.93 -70.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126875489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.422 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds