Wall clock time and date at job start Mon Mar 30 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47094 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46909 * 180.02562 * 5 4 3 7 7 C 1.35715 * 116.99787 * 179.97438 * 6 5 4 8 8 C 1.39010 * 119.90807 * 0.24938 * 7 6 5 9 9 C 1.37684 * 120.09833 * 180.21238 * 8 7 6 10 10 C 1.39803 * 119.90245 * 359.51115 * 9 8 7 11 11 C 1.47490 * 120.09492 * 180.27504 * 10 9 8 12 12 O 1.21627 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.36902 * 120.00440 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99706 * 359.97438 * 14 13 11 16 16 C 1.39017 * 120.00444 * 180.02562 * 14 13 11 17 17 N 1.31379 * 119.99604 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00318 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47063 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47534 * 119.99714 * 18 16 14 21 21 H 1.48505 * 109.47045 * 239.99874 * 18 16 14 22 22 C 1.39794 * 119.81143 * 0.26069 * 10 9 8 23 23 C 1.37684 * 119.90589 * 359.97438 * 22 10 9 24 24 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46789 * 300.00028 * 1 2 3 26 26 H 1.08998 * 109.47138 * 59.99897 * 1 2 3 27 27 H 1.09006 * 109.47297 * 240.00117 * 2 1 3 28 28 H 1.08998 * 109.47138 * 120.00102 * 2 1 3 29 29 H 1.09000 * 109.46727 * 60.00295 * 3 2 1 30 30 H 1.08998 * 109.47212 * 300.00057 * 3 2 1 31 31 H 1.08998 * 109.47452 * 59.99842 * 4 3 2 32 32 H 1.09007 * 109.46990 * 299.99819 * 4 3 2 33 33 H 1.09000 * 109.47051 * 60.00096 * 5 4 3 34 34 H 1.08998 * 109.46887 * 299.99859 * 5 4 3 35 35 H 1.08004 * 119.95340 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.05316 * 179.79646 * 9 8 7 37 37 H 0.97004 * 120.00078 * 359.97438 * 13 11 10 38 38 H 0.97010 * 119.99901 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.05026 * 180.02562 * 22 10 9 40 40 H 1.08000 * 119.95455 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5090 2.8850 -0.0012 7 6 6.1252 4.0942 -0.0014 8 6 5.3662 5.2588 0.0049 9 6 5.9872 6.4877 0.0003 10 6 7.3832 6.5631 -0.0003 11 6 8.0528 7.8773 0.0010 12 8 7.3903 8.8973 0.0030 13 7 9.3987 7.9478 -0.0001 14 6 10.0202 9.1676 0.0016 15 1 9.4320 10.0734 0.0034 16 6 11.4085 9.2404 0.0000 17 7 12.1240 8.1385 -0.0027 18 14 12.2566 10.9047 0.0030 19 1 11.2338 11.9815 0.0064 20 1 13.1066 11.0251 1.2147 21 1 13.1035 11.0310 -1.2103 22 6 8.1426 5.3895 -0.0017 23 6 7.5135 4.1648 -0.0020 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 3.7170 3.3983 0.8905 34 1 3.7163 3.3993 -0.8895 35 1 4.2878 5.1997 0.0094 36 1 5.3968 7.3920 0.0018 37 1 9.9270 7.1343 -0.0013 38 1 13.0928 8.1893 -0.0035 39 1 9.2213 5.4433 -0.0017 40 1 8.0994 3.2575 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126879786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:07 Heat of formation + Delta-G solvation = -77.895564 kcal Electronic energy + Delta-G solvation = -20053.209084 eV Core-core repulsion = 16832.212938 eV Total energy + Delta-G solvation = -3220.996147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02499 -38.48238 -36.82612 -35.91876 -34.05373 -31.97200 -31.52035 -30.54063 -29.50556 -26.58473 -25.14654 -23.14911 -22.53429 -21.57231 -21.19785 -19.46736 -18.34556 -17.78177 -16.61147 -16.50952 -15.52114 -15.40407 -14.85626 -14.39280 -14.25194 -13.94613 -13.76685 -13.50398 -13.42088 -13.29835 -13.11201 -12.69647 -12.28090 -11.93672 -11.80393 -11.57640 -11.51822 -11.47286 -11.16336 -11.13370 -10.96007 -10.63077 -10.55417 -10.36839 -10.25079 -9.60650 -8.74829 -8.48958 -8.07691 -7.86056 -6.53221 -3.86877 1.44032 1.68022 3.13829 3.14954 3.23233 3.30807 3.68896 4.11310 4.47446 4.49760 4.52545 4.65983 4.79715 4.89393 4.94810 5.03086 5.14320 5.15515 5.18335 5.31817 5.32876 5.38272 5.47386 5.60818 5.62694 5.67987 5.71259 5.80692 5.91449 5.93059 5.98871 6.03507 6.32408 6.55733 6.70814 6.91969 6.98570 7.45907 7.55823 7.99451 8.53330 9.08885 9.45491 10.00537 10.64041 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.060532 B = 0.002504 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.451732 B =11180.754528 C =11606.851941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.058 3.942 6 O -0.317 6.317 7 C 0.125 3.875 8 C -0.215 4.215 9 C -0.038 4.038 10 C -0.131 4.131 11 C 0.471 3.529 12 O -0.600 6.600 13 N -0.546 5.546 14 C -0.294 4.294 15 H 0.108 0.892 16 C 0.022 3.978 17 N -0.892 5.892 18 Si 0.934 3.066 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.064 4.064 23 C -0.155 4.155 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.393 0.607 38 H 0.274 0.726 39 H 0.134 0.866 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 -15.985 0.002 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.017 4.017 6 O -0.231 6.231 7 C 0.079 3.921 8 C -0.234 4.234 9 C -0.058 4.058 10 C -0.134 4.134 11 C 0.259 3.741 12 O -0.487 6.487 13 N -0.180 5.180 14 C -0.424 4.424 15 H 0.126 0.874 16 C -0.181 4.181 17 N -0.532 5.532 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.084 4.084 23 C -0.173 4.173 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.934 -15.503 0.003 22.232 hybrid contribution 0.687 0.405 -0.001 0.798 sum -15.247 -15.098 0.002 21.458 Atomic orbital electron populations 1.21779 0.95766 1.01656 1.01901 1.21510 0.95903 0.96479 1.02272 1.21535 0.94056 0.97418 1.02549 1.21556 0.95372 0.95027 1.03700 1.22801 0.78948 0.98449 1.01489 1.85968 1.20897 1.27457 1.88819 1.19092 0.92240 0.83743 0.97004 1.21107 0.99607 0.92203 1.10479 1.21004 0.93672 0.97100 0.93993 1.20269 0.94119 0.94173 1.04860 1.17662 0.82847 0.87862 0.85716 1.90593 1.64559 1.35923 1.57662 1.41893 1.04651 1.09527 1.61962 1.19875 0.89678 0.86217 1.46650 0.87438 1.25371 0.96415 0.99341 0.96959 1.69605 1.07140 1.27495 1.48950 0.85727 0.79093 0.81297 0.77835 1.19028 1.20568 1.20574 1.21255 1.00163 0.90958 0.96007 1.20271 0.91068 0.98450 1.07546 0.92741 0.92693 0.92699 0.91859 0.91859 0.91607 0.91612 0.90842 0.90850 0.92071 0.92080 0.85698 0.84824 0.77165 0.91556 0.84787 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16 5 C 0.06 0.58 4.73 37.16 0.18 0.76 16 6 O -0.32 -4.29 10.12 -18.85 -0.19 -4.48 16 7 C 0.12 1.91 6.70 -39.01 -0.26 1.65 16 8 C -0.22 -3.27 9.01 -39.50 -0.36 -3.63 16 9 C -0.04 -0.70 9.59 -39.20 -0.38 -1.07 16 10 C -0.13 -2.69 5.88 -104.96 -0.62 -3.31 16 11 C 0.47 11.94 7.71 -12.49 -0.10 11.84 16 12 O -0.60 -17.08 15.91 5.25 0.08 -17.00 16 13 N -0.55 -14.29 5.23 -11.94 -0.06 -14.35 16 14 C -0.29 -8.26 9.68 -15.00 -0.15 -8.41 16 15 H 0.11 3.15 7.15 -52.48 -0.38 2.77 16 16 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 17 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 18 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.06 -1.16 9.53 -39.20 -0.37 -1.53 16 23 C -0.15 -2.45 9.97 -39.50 -0.39 -2.84 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.57 7.64 -51.93 -0.40 0.17 16 34 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.13 1.53 6.28 -52.48 -0.33 1.20 16 36 H 0.13 2.44 7.64 -52.49 -0.40 2.04 16 37 H 0.39 9.72 5.92 -40.82 -0.24 9.47 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.13 2.34 6.39 -52.49 -0.34 2.00 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -31.21 338.46 -7.83 -39.04 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.84 Total: 8.54 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.62 Total: -9.37 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.66 Total: -37.58 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.11 Total: -21.48 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.21 -7.83 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126879786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.857 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds