Wall clock time and date at job start Mon Mar 30 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47094 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46909 * 180.02562 * 5 4 3 7 7 C 1.35715 * 116.99787 * 179.97438 * 6 5 4 8 8 C 1.39010 * 119.90807 * 0.24938 * 7 6 5 9 9 C 1.37684 * 120.09833 * 180.21238 * 8 7 6 10 10 C 1.39803 * 119.90245 * 359.51115 * 9 8 7 11 11 C 1.47490 * 120.09492 * 180.27504 * 10 9 8 12 12 O 1.21627 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.36902 * 120.00440 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99706 * 359.97438 * 14 13 11 16 16 C 1.39017 * 120.00444 * 180.02562 * 14 13 11 17 17 N 1.31379 * 119.99604 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00318 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47063 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47534 * 119.99714 * 18 16 14 21 21 H 1.48505 * 109.47045 * 239.99874 * 18 16 14 22 22 C 1.39794 * 119.81143 * 0.26069 * 10 9 8 23 23 C 1.37684 * 119.90589 * 359.97438 * 22 10 9 24 24 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46789 * 300.00028 * 1 2 3 26 26 H 1.08998 * 109.47138 * 59.99897 * 1 2 3 27 27 H 1.09006 * 109.47297 * 240.00117 * 2 1 3 28 28 H 1.08998 * 109.47138 * 120.00102 * 2 1 3 29 29 H 1.09000 * 109.46727 * 60.00295 * 3 2 1 30 30 H 1.08998 * 109.47212 * 300.00057 * 3 2 1 31 31 H 1.08998 * 109.47452 * 59.99842 * 4 3 2 32 32 H 1.09007 * 109.46990 * 299.99819 * 4 3 2 33 33 H 1.09000 * 109.47051 * 60.00096 * 5 4 3 34 34 H 1.08998 * 109.46887 * 299.99859 * 5 4 3 35 35 H 1.08004 * 119.95340 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.05316 * 179.79646 * 9 8 7 37 37 H 0.97004 * 120.00078 * 359.97438 * 13 11 10 38 38 H 0.97010 * 119.99901 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.05026 * 180.02562 * 22 10 9 40 40 H 1.08000 * 119.95455 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5090 2.8850 -0.0012 7 6 6.1252 4.0942 -0.0014 8 6 5.3662 5.2588 0.0049 9 6 5.9872 6.4877 0.0003 10 6 7.3832 6.5631 -0.0003 11 6 8.0528 7.8773 0.0010 12 8 7.3903 8.8973 0.0030 13 7 9.3987 7.9478 -0.0001 14 6 10.0202 9.1676 0.0016 15 1 9.4320 10.0734 0.0034 16 6 11.4085 9.2404 0.0000 17 7 12.1240 8.1385 -0.0027 18 14 12.2566 10.9047 0.0030 19 1 11.2338 11.9815 0.0064 20 1 13.1066 11.0251 1.2147 21 1 13.1035 11.0310 -1.2103 22 6 8.1426 5.3895 -0.0017 23 6 7.5135 4.1648 -0.0020 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 3.7170 3.3983 0.8905 34 1 3.7163 3.3993 -0.8895 35 1 4.2878 5.1997 0.0094 36 1 5.3968 7.3920 0.0018 37 1 9.9270 7.1343 -0.0013 38 1 13.0928 8.1893 -0.0035 39 1 9.2213 5.4433 -0.0017 40 1 8.0994 3.2575 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126879786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:07 Heat of formation + Delta-G solvation = -96.062241 kcal Electronic energy + Delta-G solvation = -20053.996851 eV Core-core repulsion = 16832.212938 eV Total energy + Delta-G solvation = -3221.783913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31308 -40.15852 -38.14125 -36.63530 -36.10593 -33.49857 -32.69616 -31.90363 -30.87431 -27.41857 -26.98113 -24.21773 -23.97945 -22.42151 -21.85267 -21.18754 -20.20331 -19.12643 -18.18935 -17.36776 -16.95496 -16.66354 -16.07599 -15.83892 -15.74451 -15.49603 -15.05255 -14.62796 -14.53598 -14.35658 -14.31161 -13.70513 -13.58327 -13.32062 -13.26596 -12.94994 -12.60559 -12.41748 -12.31361 -12.11751 -12.01521 -11.76829 -11.65651 -11.62018 -11.55561 -11.36645 -10.53385 -10.12605 -10.07370 -9.22756 -8.55371 -6.00549 -0.00230 0.34580 1.38423 1.41052 1.56230 2.04985 2.13755 2.26888 2.82117 3.13644 3.30044 3.75455 3.83079 3.93629 3.94307 4.12120 4.19048 4.24754 4.29563 4.35276 4.45791 4.46658 4.60494 4.65720 4.83528 4.88230 5.00979 5.01552 5.07632 5.16718 5.21879 5.27165 5.32196 5.36170 5.42607 5.47526 5.50665 5.65515 5.94575 6.40032 6.50525 7.02651 7.44130 8.00454 8.62332 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.060532 B = 0.002504 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.451732 B =11180.754528 C =11606.851941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.113 4.113 5 C 0.047 3.953 6 O -0.319 6.319 7 C 0.143 3.857 8 C -0.205 4.205 9 C -0.041 4.041 10 C -0.167 4.167 11 C 0.469 3.531 12 O -0.641 6.641 13 N -0.555 5.555 14 C -0.338 4.338 15 H 0.083 0.917 16 C -0.011 4.011 17 N -0.912 5.912 18 Si 1.001 2.999 19 H -0.272 1.272 20 H -0.267 1.267 21 H -0.267 1.267 22 C -0.060 4.060 23 C -0.154 4.154 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.398 0.602 38 H 0.282 0.718 39 H 0.133 0.867 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 -17.808 0.004 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.151 4.151 5 C -0.028 4.028 6 O -0.233 6.233 7 C 0.096 3.904 8 C -0.223 4.223 9 C -0.061 4.061 10 C -0.170 4.170 11 C 0.259 3.741 12 O -0.531 6.531 13 N -0.190 5.190 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.212 4.212 17 N -0.552 5.552 18 Si 0.823 3.177 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.192 1.192 22 C -0.079 4.079 23 C -0.173 4.173 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.150 0.850 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.845 -17.377 0.005 24.201 hybrid contribution 0.780 0.750 -0.002 1.082 sum -16.064 -16.627 0.003 23.120 Atomic orbital electron populations 1.21782 0.95416 1.01962 1.01990 1.21513 0.96211 0.96167 1.02328 1.21515 0.92856 0.97842 1.02961 1.21544 0.96261 0.93640 1.03653 1.23173 0.76836 1.00169 1.02585 1.86000 1.23106 1.26204 1.87990 1.19202 0.92241 0.84500 0.94418 1.21340 1.01331 0.90732 1.08938 1.21040 0.92649 0.98319 0.94052 1.19983 0.95198 0.92471 1.09343 1.18457 0.82552 0.89358 0.83758 1.90536 1.65357 1.38054 1.59156 1.41891 1.05085 1.09192 1.62817 1.19827 0.90576 0.86288 1.50005 0.89886 1.26196 0.96231 1.03142 0.95635 1.69658 1.07741 1.29076 1.48706 0.84767 0.77776 0.76562 0.78578 1.19662 1.19233 1.19244 1.21219 1.00066 0.90991 0.95665 1.20487 0.91837 0.98302 1.06653 0.92392 0.92607 0.92614 0.91835 0.91833 0.91203 0.91212 0.90929 0.90935 0.90930 0.90949 0.82227 0.85538 0.76658 0.90801 0.84959 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.18 5.93 30.59 0.18 -1.00 16 3 C -0.11 -1.14 5.21 30.59 0.16 -0.98 16 4 C -0.11 -1.45 5.58 30.59 0.17 -1.28 16 5 C 0.05 0.76 4.73 71.98 0.34 1.10 16 6 O -0.32 -7.48 10.12 -90.36 -0.91 -8.39 16 7 C 0.14 3.94 6.70 22.64 0.15 4.09 16 8 C -0.20 -5.69 9.01 22.32 0.20 -5.49 16 9 C -0.04 -1.48 9.59 22.52 0.22 -1.26 16 10 C -0.17 -6.99 5.88 -20.08 -0.12 -7.11 16 11 C 0.47 24.87 7.71 86.68 0.67 25.54 16 12 O -0.64 -38.39 15.91 -4.12 -0.07 -38.46 16 13 N -0.56 -30.38 5.23 -309.92 -1.62 -32.00 16 14 C -0.34 -19.77 9.68 84.09 0.81 -18.96 16 15 H 0.08 5.16 7.15 -2.91 -0.02 5.13 16 16 C -0.01 -0.60 5.50 84.95 0.47 -0.13 16 17 N -0.91 -49.36 13.05 21.68 0.28 -49.08 16 18 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 C -0.06 -2.14 9.53 22.52 0.21 -1.92 16 23 C -0.15 -4.53 9.97 22.32 0.22 -4.31 16 24 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 1.06 7.64 -2.39 -0.02 1.04 16 34 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 35 H 0.16 3.28 6.28 -2.91 -0.02 3.26 16 36 H 0.13 4.68 7.64 -2.91 -0.02 4.66 16 37 H 0.40 20.46 5.92 -92.71 -0.55 19.91 16 38 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 39 H 0.13 4.67 6.39 -2.91 -0.02 4.65 16 40 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -69.00 338.46 4.60 -64.40 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.49 Total: 30.89 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.40 Total: -12.35 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -1.34 Total: -81.07 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.98 Total: -46.85 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.00 4.60 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126879786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.663 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds