Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47034 * 119.99659 * 2 1 3 5 5 O 1.42900 * 109.46740 * 65.00042 * 4 2 1 6 6 C 1.35905 * 116.99955 * 180.02562 * 5 4 2 7 7 C 1.38730 * 120.06063 * 180.02562 * 6 5 4 8 8 C 1.38137 * 119.94754 * 180.29814 * 7 6 5 9 9 C 1.38275 * 120.05359 * 359.41944 * 8 7 6 10 10 C 1.50699 * 119.94142 * 180.30233 * 9 8 7 11 11 N 1.46499 * 109.46988 * 270.29838 * 10 9 8 12 12 C 1.34775 * 119.99827 * 180.02562 * 11 10 9 13 13 O 1.21685 * 119.99910 * 0.02562 * 12 11 10 14 14 C 1.46384 * 119.99993 * 180.02562 * 12 11 10 15 15 H 1.08004 * 119.99541 * 353.93745 * 14 12 11 16 16 C 1.40041 * 120.00141 * 173.93833 * 14 12 11 17 17 N 1.30674 * 119.99908 * 6.15110 * 16 14 12 18 18 Si 1.86795 * 120.00147 * 186.14920 * 16 14 12 19 19 H 1.48506 * 109.47112 * 94.98478 * 18 16 14 20 20 H 1.48497 * 109.47449 * 214.98397 * 18 16 14 21 21 H 1.48500 * 109.47160 * 334.98631 * 18 16 14 22 22 C 1.38262 * 120.10780 * 0.60182 * 9 8 7 23 23 C 1.38143 * 120.05786 * 359.68014 * 22 9 8 24 24 H 1.08998 * 109.46838 * 60.00271 * 1 2 3 25 25 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46860 * 300.00030 * 1 2 3 27 27 H 1.08999 * 109.46860 * 239.99970 * 2 1 3 28 28 H 1.08999 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47066 * 299.99590 * 3 2 1 30 30 H 1.08993 * 109.47574 * 59.99583 * 3 2 1 31 31 H 1.08998 * 109.47168 * 305.00287 * 4 2 1 32 32 H 1.08993 * 109.47016 * 185.00075 * 4 2 1 33 33 H 1.08007 * 120.02552 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.97255 * 179.70118 * 8 7 6 35 35 H 1.08994 * 109.47385 * 30.30052 * 10 9 8 36 36 H 1.09007 * 109.46632 * 150.30682 * 10 9 8 37 37 H 0.97005 * 119.99900 * 0.02562 * 11 10 9 38 38 H 0.96998 * 120.00218 * 179.97438 * 17 16 14 39 39 H 1.08007 * 119.97262 * 179.69784 * 22 9 8 40 40 H 1.07998 * 120.02724 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0396 -2.8854 2.2335 7 6 1.7066 -4.2321 2.2429 8 6 2.0864 -5.0289 3.3056 9 6 2.8081 -4.4879 4.3535 10 6 3.2269 -5.3609 5.5083 11 7 2.1817 -5.3477 6.5347 12 6 2.3396 -6.0621 7.6665 13 8 3.3506 -6.7178 7.8360 14 6 1.2950 -6.0493 8.6919 15 1 0.4438 -5.3928 8.5873 16 6 1.3993 -6.8883 9.8083 17 7 2.4833 -7.5933 9.9968 18 14 -0.0110 -6.9996 11.0281 19 1 -0.8748 -8.1569 10.6818 20 1 0.5325 -7.1801 12.3982 21 1 -0.8120 -5.7503 10.9739 22 6 3.1409 -3.1459 4.3467 23 6 2.7585 -2.3436 3.2891 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 1.1472 -4.6563 1.4222 34 1 1.8232 -6.0763 3.3156 35 1 3.3776 -6.3814 5.1563 36 1 4.1569 -4.9816 5.9319 37 1 1.3760 -4.8247 6.3996 38 1 2.5558 -8.1741 10.7702 39 1 3.7005 -2.7245 5.1687 40 1 3.0190 -1.2955 3.2841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132395004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -73.027587 kcal Electronic energy + Delta-G solvation = -20319.764235 eV Core-core repulsion = 17098.979180 eV Total energy + Delta-G solvation = -3220.785055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22213 -38.21223 -36.96129 -35.53773 -33.31838 -32.27767 -30.97635 -29.99406 -27.53520 -27.18096 -26.37156 -24.42140 -22.73464 -21.13249 -20.42019 -19.61377 -18.22750 -17.32223 -16.47263 -15.97436 -15.43119 -15.09941 -14.69342 -14.51669 -14.31064 -14.01729 -13.79328 -13.47382 -13.24557 -13.04594 -12.67647 -12.59799 -12.41714 -12.20059 -11.54491 -11.48566 -11.38756 -11.19278 -11.13448 -10.98211 -10.88954 -10.78881 -10.62481 -10.41210 -10.19590 -8.91338 -8.82786 -8.15187 -7.52637 -7.47009 -6.16933 -4.61074 1.43562 1.48893 3.05159 3.15605 3.22697 3.26404 3.81550 4.14756 4.39959 4.45442 4.61088 4.69874 4.87106 4.91418 5.06068 5.07930 5.08628 5.19920 5.27346 5.28854 5.46475 5.49123 5.52488 5.54201 5.67397 5.70581 5.80349 5.90787 5.96585 6.04268 6.29550 6.34128 6.43591 6.47574 6.85317 6.92066 7.40395 7.46173 7.96566 8.12110 8.36522 9.04962 9.56963 10.62122 10.80682 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.002804 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.160172 B = 9985.055206 C =10347.458833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.063 3.937 5 O -0.316 6.316 6 C 0.123 3.877 7 C -0.154 4.154 8 C -0.065 4.065 9 C -0.123 4.123 10 C 0.173 3.827 11 N -0.763 5.763 12 C 0.555 3.445 13 O -0.582 6.582 14 C -0.545 4.545 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.908 3.092 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.065 4.065 23 C -0.211 4.211 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.381 0.619 38 H 0.268 0.732 39 H 0.126 0.874 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 15.065 -18.649 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.012 4.012 5 O -0.230 6.230 6 C 0.078 3.922 7 C -0.173 4.173 8 C -0.083 4.083 9 C -0.124 4.124 10 C 0.049 3.951 11 N -0.419 5.419 12 C 0.359 3.641 13 O -0.465 6.465 14 C -0.582 4.582 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.083 4.083 23 C -0.230 4.230 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.212 0.788 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.920 14.393 -18.572 23.574 hybrid contribution -0.936 0.391 0.675 1.218 sum -2.856 14.784 -17.896 23.388 Atomic orbital electron populations 1.21822 0.94315 1.02642 1.01683 1.21124 0.97015 0.95754 0.97444 1.21785 1.01225 0.94864 1.02505 1.22877 0.99442 0.79855 0.99051 1.86019 1.74539 1.20659 1.41779 1.18967 0.95183 0.90864 0.87199 1.20380 1.05295 0.90912 1.00709 1.20963 0.95401 0.99856 0.92116 1.20141 1.00510 0.94627 0.97082 1.19749 0.92352 0.97040 0.85990 1.46219 1.20987 1.54860 1.19810 1.18251 0.87568 0.78214 0.80116 1.90596 1.31228 1.45461 1.79204 1.20884 1.07245 1.24969 1.05131 0.91412 1.25707 0.95737 0.94093 0.97683 1.70030 1.24882 1.19664 1.25156 0.86363 0.81575 0.79235 0.79593 1.19808 1.20479 1.18907 1.20926 0.97519 0.92940 0.96952 1.21178 1.05143 1.00499 0.96133 0.92570 0.91767 0.92670 0.90144 0.92343 0.91755 0.92284 0.92018 0.92141 0.85460 0.85141 0.92570 0.92663 0.78771 0.92141 0.85629 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.09 37.16 0.34 -0.74 16 2 C -0.09 -0.69 3.16 -90.62 -0.29 -0.97 16 3 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 4 C 0.06 0.56 4.12 37.16 0.15 0.71 16 5 O -0.32 -3.74 9.67 -19.44 -0.19 -3.93 16 6 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 7 C -0.15 -2.04 9.99 -39.44 -0.39 -2.44 16 8 C -0.06 -0.93 9.69 -39.60 -0.38 -1.32 16 9 C -0.12 -1.95 5.25 -104.60 -0.55 -2.50 16 10 C 0.17 3.42 5.79 -5.19 -0.03 3.39 16 11 N -0.76 -17.46 5.54 -62.90 -0.35 -17.81 16 12 C 0.55 16.02 7.74 -12.98 -0.10 15.92 16 13 O -0.58 -19.11 15.05 5.20 0.08 -19.03 16 14 C -0.55 -15.61 9.53 -35.63 -0.34 -15.95 16 15 H 0.07 1.79 7.86 -52.48 -0.41 1.37 16 16 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 17 N -0.77 -23.30 11.85 55.55 0.66 -22.64 16 18 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.06 -0.93 9.69 -39.61 -0.38 -1.31 16 23 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 32 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 33 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 36 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.38 7.88 8.44 -40.82 -0.34 7.53 16 38 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 39 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -34.41 340.71 -8.11 -42.52 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.07 Total: 5.44 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.35 Total: -4.99 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.31 Total: -40.45 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.11 Total: -22.96 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.41 -8.11 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132395004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.509 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds