Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47034 * 119.99659 * 2 1 3 5 5 O 1.42900 * 109.46740 * 65.00042 * 4 2 1 6 6 C 1.35905 * 116.99955 * 180.02562 * 5 4 2 7 7 C 1.38730 * 120.06063 * 180.02562 * 6 5 4 8 8 C 1.38137 * 119.94754 * 180.29814 * 7 6 5 9 9 C 1.38275 * 120.05359 * 359.41944 * 8 7 6 10 10 C 1.50699 * 119.94142 * 180.30233 * 9 8 7 11 11 N 1.46499 * 109.46988 * 270.29838 * 10 9 8 12 12 C 1.34775 * 119.99827 * 180.02562 * 11 10 9 13 13 O 1.21685 * 119.99910 * 0.02562 * 12 11 10 14 14 C 1.46384 * 119.99993 * 180.02562 * 12 11 10 15 15 H 1.08004 * 119.99541 * 353.93745 * 14 12 11 16 16 C 1.40041 * 120.00141 * 173.93833 * 14 12 11 17 17 N 1.30674 * 119.99908 * 6.15110 * 16 14 12 18 18 Si 1.86795 * 120.00147 * 186.14920 * 16 14 12 19 19 H 1.48506 * 109.47112 * 94.98478 * 18 16 14 20 20 H 1.48497 * 109.47449 * 214.98397 * 18 16 14 21 21 H 1.48500 * 109.47160 * 334.98631 * 18 16 14 22 22 C 1.38262 * 120.10780 * 0.60182 * 9 8 7 23 23 C 1.38143 * 120.05786 * 359.68014 * 22 9 8 24 24 H 1.08998 * 109.46838 * 60.00271 * 1 2 3 25 25 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46860 * 300.00030 * 1 2 3 27 27 H 1.08999 * 109.46860 * 239.99970 * 2 1 3 28 28 H 1.08999 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47066 * 299.99590 * 3 2 1 30 30 H 1.08993 * 109.47574 * 59.99583 * 3 2 1 31 31 H 1.08998 * 109.47168 * 305.00287 * 4 2 1 32 32 H 1.08993 * 109.47016 * 185.00075 * 4 2 1 33 33 H 1.08007 * 120.02552 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.97255 * 179.70118 * 8 7 6 35 35 H 1.08994 * 109.47385 * 30.30052 * 10 9 8 36 36 H 1.09007 * 109.46632 * 150.30682 * 10 9 8 37 37 H 0.97005 * 119.99900 * 0.02562 * 11 10 9 38 38 H 0.96998 * 120.00218 * 179.97438 * 17 16 14 39 39 H 1.08007 * 119.97262 * 179.69784 * 22 9 8 40 40 H 1.07998 * 120.02724 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0396 -2.8854 2.2335 7 6 1.7066 -4.2321 2.2429 8 6 2.0864 -5.0289 3.3056 9 6 2.8081 -4.4879 4.3535 10 6 3.2269 -5.3609 5.5083 11 7 2.1817 -5.3477 6.5347 12 6 2.3396 -6.0621 7.6665 13 8 3.3506 -6.7178 7.8360 14 6 1.2950 -6.0493 8.6919 15 1 0.4438 -5.3928 8.5873 16 6 1.3993 -6.8883 9.8083 17 7 2.4833 -7.5933 9.9968 18 14 -0.0110 -6.9996 11.0281 19 1 -0.8748 -8.1569 10.6818 20 1 0.5325 -7.1801 12.3982 21 1 -0.8120 -5.7503 10.9739 22 6 3.1409 -3.1459 4.3467 23 6 2.7585 -2.3436 3.2891 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 1.1472 -4.6563 1.4222 34 1 1.8232 -6.0763 3.3156 35 1 3.3776 -6.3814 5.1563 36 1 4.1569 -4.9816 5.9319 37 1 1.3760 -4.8247 6.3996 38 1 2.5558 -8.1741 10.7702 39 1 3.7005 -2.7245 5.1687 40 1 3.0190 -1.2955 3.2841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132395004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -95.376731 kcal Electronic energy + Delta-G solvation = -20320.733367 eV Core-core repulsion = 17098.979180 eV Total energy + Delta-G solvation = -3221.754187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22719 -39.62406 -38.65978 -36.29011 -35.13019 -34.40667 -32.05409 -31.45590 -28.71027 -28.04479 -27.63438 -25.96013 -23.75308 -22.37835 -21.64734 -21.06462 -19.37919 -19.12319 -17.50006 -17.30485 -16.89036 -16.61250 -16.04645 -15.69381 -15.60338 -15.18042 -15.05333 -14.78308 -14.37265 -14.25479 -14.03570 -13.61008 -13.36264 -13.17671 -13.09739 -12.95684 -12.71323 -12.64573 -12.35781 -12.16987 -12.01271 -11.99100 -11.95096 -11.55737 -11.48526 -10.93245 -9.99484 -9.94266 -9.49354 -9.11986 -8.29191 -6.85300 0.33702 0.37135 1.40757 1.41992 1.58120 2.20315 2.25434 2.46801 2.67469 3.37274 3.59922 3.74231 3.84238 3.85927 3.90720 3.96686 4.13587 4.27469 4.39994 4.42987 4.52225 4.64065 4.68981 4.76148 4.79305 4.82763 4.99559 5.01773 5.07682 5.20159 5.24126 5.32339 5.33447 5.39040 5.41428 5.69378 5.76156 5.87562 6.20609 6.26884 6.44759 6.86684 7.53897 8.48136 8.66812 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.002804 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.160172 B = 9985.055206 C =10347.458833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.054 3.946 5 O -0.322 6.322 6 C 0.127 3.873 7 C -0.157 4.157 8 C -0.066 4.066 9 C -0.140 4.140 10 C 0.180 3.820 11 N -0.749 5.749 12 C 0.537 3.463 13 O -0.633 6.633 14 C -0.573 4.573 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.822 5.822 18 Si 1.000 3.000 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.249 1.249 22 C -0.067 4.067 23 C -0.206 4.206 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.393 0.607 38 H 0.275 0.725 39 H 0.129 0.871 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 17.020 -19.390 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.021 4.021 5 O -0.236 6.236 6 C 0.081 3.919 7 C -0.175 4.175 8 C -0.085 4.085 9 C -0.141 4.141 10 C 0.056 3.944 11 N -0.404 5.404 12 C 0.342 3.658 13 O -0.521 6.521 14 C -0.610 4.610 15 H 0.105 0.895 16 C -0.187 4.187 17 N -0.451 5.451 18 Si 0.819 3.181 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.172 1.172 22 C -0.086 4.086 23 C -0.224 4.224 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.227 0.773 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.699 16.399 -19.371 25.648 hybrid contribution -0.363 -0.118 0.754 0.845 sum -4.063 16.280 -18.618 25.063 Atomic orbital electron populations 1.21823 0.94491 1.01784 1.02366 1.21147 0.96852 0.96596 0.96509 1.21772 1.01564 0.93586 1.03139 1.23174 1.00282 0.78373 1.00230 1.86036 1.74369 1.22043 1.41149 1.19112 0.94304 0.91046 0.87396 1.20547 1.05167 0.91144 1.00670 1.20989 0.95157 1.00269 0.92083 1.19781 1.02958 0.94895 0.96423 1.19691 0.91048 0.97217 0.86483 1.45905 1.21998 1.53431 1.19032 1.18649 0.87149 0.78304 0.81721 1.90548 1.33063 1.47797 1.80697 1.21415 1.07790 1.25909 1.05842 0.89541 1.26999 0.98965 0.92903 0.99861 1.70192 1.27859 1.20656 1.26438 0.84980 0.77019 0.80007 0.76099 1.18754 1.19656 1.17177 1.20991 0.97503 0.92379 0.97724 1.21374 1.04354 1.01534 0.95183 0.91397 0.93347 0.92551 0.90390 0.91821 0.90856 0.91959 0.91405 0.91118 0.83732 0.84875 0.94040 0.94046 0.77336 0.91507 0.85282 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.09 71.98 0.65 -1.22 16 2 C -0.09 -1.13 3.16 -10.79 -0.03 -1.16 16 3 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 4 C 0.05 0.82 4.12 71.98 0.30 1.12 16 5 O -0.32 -6.91 9.67 -92.48 -0.89 -7.80 16 6 C 0.13 3.06 6.69 22.51 0.15 3.21 16 7 C -0.16 -3.90 9.99 22.36 0.22 -3.68 16 8 C -0.07 -1.88 9.69 22.25 0.22 -1.66 16 9 C -0.14 -4.44 5.25 -19.85 -0.10 -4.54 16 10 C 0.18 7.36 5.79 85.63 0.50 7.86 16 11 N -0.75 -35.13 5.54 -471.14 -2.61 -37.74 16 12 C 0.54 32.04 7.74 86.36 0.67 32.71 16 13 O -0.63 -43.51 15.05 -4.30 -0.06 -43.57 16 14 C -0.57 -33.13 9.53 24.83 0.24 -32.89 16 15 H 0.09 4.50 7.86 -2.91 -0.02 4.48 16 16 C 0.03 1.57 5.49 85.30 0.47 2.04 16 17 N -0.82 -51.06 11.85 21.83 0.26 -50.80 16 18 Si 1.00 41.43 29.56 68.60 2.03 43.46 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.07 -1.87 9.69 22.25 0.22 -1.65 16 23 C -0.21 -4.80 9.04 22.37 0.20 -4.60 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 32 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.04 1.80 8.09 -2.39 -0.02 1.78 16 36 H 0.04 1.79 8.08 -2.38 -0.02 1.77 16 37 H 0.39 16.34 8.44 -92.70 -0.78 15.56 16 38 H 0.28 15.40 8.29 -92.71 -0.77 14.63 16 39 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.15 2.66 6.30 -2.91 -0.02 2.64 16 Total: -1.00 -76.22 340.71 3.32 -72.90 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.25 Total: 28.57 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.35 Total: -5.02 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.35 Total: -88.54 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.96 Total: -51.37 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -76.22 3.32 -72.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132395004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.475 kcal (2) G-P(sol) polarization free energy of solvation -76.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds