Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47134 * 2 1 4 4 C 1.52997 * 109.47435 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47453 * 180.02562 * 4 3 2 6 6 C 1.35908 * 117.00224 * 180.02562 * 5 4 3 7 7 C 1.38889 * 119.97050 * 0.02562 * 6 5 4 8 8 C 1.37942 * 120.02858 * 180.02562 * 7 6 5 9 9 C 1.39121 * 119.97112 * 359.95533 * 8 7 6 10 10 N 1.39515 * 120.02602 * 180.29706 * 9 8 7 11 11 C 1.34781 * 120.00201 * 24.88132 * 10 9 8 12 12 O 1.21774 * 119.99817 * 5.51601 * 11 10 9 13 13 C 1.41772 * 119.99995 * 185.51656 * 11 10 9 14 14 H 1.08004 * 120.00015 * 0.02562 * 13 11 10 15 15 C 1.40137 * 119.99771 * 179.97438 * 13 11 10 16 16 N 1.30627 * 120.00196 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99617 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47137 * 60.00824 * 17 15 13 19 19 H 1.48508 * 109.46740 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47385 * 300.00232 * 17 15 13 21 21 C 1.39081 * 119.94383 * 0.02610 * 9 8 7 22 22 C 1.50703 * 120.01501 * 180.02562 * 21 9 8 23 23 C 1.37984 * 119.97084 * 359.97438 * 21 9 8 24 24 H 1.08997 * 109.47465 * 59.99791 * 1 2 3 25 25 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46926 * 299.99983 * 1 2 3 27 27 H 1.09001 * 109.46926 * 240.00017 * 2 1 3 28 28 H 1.08997 * 109.47465 * 120.00209 * 2 1 3 29 29 H 1.08993 * 109.47352 * 59.99904 * 3 2 1 30 30 H 1.09005 * 109.46963 * 300.00147 * 3 2 1 31 31 H 1.09001 * 109.47098 * 59.99727 * 4 3 2 32 32 H 1.09005 * 109.46842 * 299.99825 * 4 3 2 33 33 H 1.08007 * 119.98432 * 0.03116 * 7 6 5 34 34 H 1.08004 * 120.00812 * 180.02562 * 8 7 6 35 35 H 0.97000 * 119.99921 * 204.88571 * 10 9 8 36 36 H 0.96991 * 119.99923 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.46894 * 89.99843 * 22 21 9 38 38 H 1.08999 * 109.47255 * 209.99693 * 22 21 9 39 39 H 1.08998 * 109.47200 * 330.00304 * 22 21 9 40 40 H 1.08007 * 119.98409 * 179.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9679 -0.0010 7 6 6.2392 1.8660 -0.0031 8 6 7.6069 2.0454 -0.0036 9 6 8.1393 3.3307 -0.0030 10 7 9.5224 3.5135 -0.0097 11 6 10.3266 2.5534 -0.5076 12 8 9.8439 1.5716 -1.0423 13 6 11.7346 2.6865 -0.4087 14 1 12.1628 3.5570 0.0660 15 6 12.5708 1.6879 -0.9259 16 7 12.0530 0.6347 -1.4996 17 14 14.4260 1.8636 -0.7962 18 1 14.8160 1.9528 0.6338 19 1 15.0795 0.6824 -1.4152 20 1 14.8574 3.0953 -1.5048 21 6 7.2915 4.4333 -0.0013 22 6 7.8664 5.8263 -0.0012 23 6 5.9237 4.2511 -0.0008 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 5.8256 0.8683 -0.0044 34 1 8.2641 1.1884 -0.0056 35 1 9.9052 4.3316 0.3440 36 1 12.6318 -0.0562 -1.8578 37 1 8.0038 6.1628 -1.0289 38 1 7.1830 6.5015 0.5139 39 1 8.8284 5.8224 0.5114 40 1 5.2652 5.1072 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132709529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -70.940550 kcal Electronic energy + Delta-G solvation = -20754.259031 eV Core-core repulsion = 17533.564476 eV Total energy + Delta-G solvation = -3220.694555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83073 -38.43769 -36.59156 -35.17973 -33.20025 -32.53649 -31.72142 -29.89846 -28.23559 -26.90116 -25.77690 -23.81739 -22.36468 -21.32828 -20.50239 -19.70545 -17.62668 -17.23719 -16.28171 -16.13404 -15.77084 -15.13541 -14.74039 -14.22737 -13.89102 -13.70455 -13.50111 -13.26807 -12.91624 -12.66603 -12.60438 -12.47041 -12.29871 -11.80486 -11.59984 -11.48378 -11.35484 -11.22219 -11.13845 -11.08856 -10.87931 -10.64801 -10.50668 -10.35891 -10.20389 -9.11571 -8.71705 -8.23355 -7.65378 -6.64165 -6.37443 -4.90631 1.93215 2.17057 3.06164 3.11504 3.13321 3.47829 3.97196 4.24134 4.54337 4.71148 4.73276 4.78896 4.87019 5.11667 5.29550 5.31199 5.41202 5.47528 5.56277 5.60127 5.61000 5.69112 5.71067 5.81267 5.86417 5.93601 6.00722 6.02705 6.09788 6.23010 6.37010 6.68487 6.75328 7.09127 7.14957 7.21361 7.31956 7.83031 7.89794 8.06564 8.26478 8.79241 9.30439 10.37576 10.58310 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.003386 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.453360 B = 8267.735119 C = 9223.872239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.061 3.939 5 O -0.324 6.324 6 C 0.075 3.925 7 C -0.186 4.186 8 C -0.101 4.101 9 C 0.165 3.835 10 N -0.696 5.696 11 C 0.544 3.456 12 O -0.567 6.567 13 C -0.539 4.539 14 H 0.069 0.931 15 C 0.088 3.912 16 N -0.748 5.748 17 Si 0.913 3.087 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.119 4.119 22 C -0.100 4.100 23 C -0.129 4.129 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.155 0.845 35 H 0.390 0.610 36 H 0.273 0.727 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 3.002 3.812 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.015 4.015 5 O -0.239 6.239 6 C 0.030 3.970 7 C -0.205 4.205 8 C -0.122 4.122 9 C 0.066 3.934 10 N -0.339 5.339 11 C 0.353 3.647 12 O -0.451 6.451 13 C -0.574 4.574 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.375 5.375 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.172 0.828 35 H 0.224 0.776 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.581 2.228 3.327 15.120 hybrid contribution 1.211 0.235 0.172 1.245 sum -13.370 2.463 3.499 14.038 Atomic orbital electron populations 1.21747 0.95407 1.01694 1.01962 1.21443 0.96171 0.95939 1.02516 1.21552 0.93158 0.97406 1.03407 1.22696 0.94642 0.82868 1.01275 1.85930 1.19804 1.28160 1.90003 1.18777 0.81486 0.94107 1.02624 1.21105 0.94147 0.97244 1.08033 1.21501 0.94125 0.97966 0.98560 1.17786 0.84990 0.92708 0.97954 1.44129 1.02779 1.22844 1.64175 1.17028 0.87193 0.81651 0.78804 1.90590 1.75999 1.31111 1.47416 1.20025 0.90330 1.07248 1.39800 0.91248 1.25757 1.00793 0.94083 0.92852 1.69992 1.36758 1.05961 1.24815 0.86341 0.82005 0.78577 0.79388 1.19045 1.20352 1.19053 1.19355 0.92218 0.94632 1.06115 1.20569 1.00443 0.92745 1.01979 1.19811 0.93621 0.94221 1.07152 0.92618 0.92605 0.92649 0.91628 0.91676 0.91064 0.91037 0.92369 0.92463 0.86370 0.82788 0.77572 0.91593 0.91535 0.91981 0.91992 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.18 5.58 -26.73 -0.15 -1.33 16 4 C 0.06 0.77 4.74 37.16 0.18 0.95 16 5 O -0.32 -5.21 10.13 -19.45 -0.20 -5.41 16 6 C 0.08 1.35 6.69 -39.12 -0.26 1.09 16 7 C -0.19 -3.56 9.03 -39.45 -0.36 -3.92 16 8 C -0.10 -2.26 8.70 -39.36 -0.34 -2.60 16 9 C 0.17 3.59 6.41 -83.72 -0.54 3.05 16 10 N -0.70 -15.93 5.14 -12.40 -0.06 -15.99 16 11 C 0.54 15.09 7.37 -14.91 -0.11 14.98 16 12 O -0.57 -17.57 12.03 5.12 0.06 -17.51 16 13 C -0.54 -14.61 9.31 -37.52 -0.35 -14.96 16 14 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 15 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 16 N -0.75 -21.43 11.73 55.55 0.65 -20.78 16 17 Si 0.91 19.25 29.56 -169.99 -5.02 14.22 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 C -0.12 -2.18 5.90 -104.40 -0.62 -2.80 16 22 C -0.10 -1.46 9.74 36.01 0.35 -1.11 16 23 C -0.13 -2.25 9.63 -39.45 -0.38 -2.63 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 32 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 33 H 0.12 2.00 6.29 -52.48 -0.33 1.67 16 34 H 0.15 3.94 5.79 -52.48 -0.30 3.63 16 35 H 0.39 7.69 6.87 -40.82 -0.28 7.40 16 36 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.06 0.86 6.41 -51.93 -0.33 0.53 16 40 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -32.20 332.48 -7.84 -40.03 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.81 Total: 9.32 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.46 Total: -8.89 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.59 Total: -36.77 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.14 Total: -22.92 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.20 -7.84 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132709529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.909 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds