Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47134 * 2 1 4 4 C 1.52997 * 109.47435 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47453 * 180.02562 * 4 3 2 6 6 C 1.35908 * 117.00224 * 180.02562 * 5 4 3 7 7 C 1.38889 * 119.97050 * 0.02562 * 6 5 4 8 8 C 1.37942 * 120.02858 * 180.02562 * 7 6 5 9 9 C 1.39121 * 119.97112 * 359.95533 * 8 7 6 10 10 N 1.39515 * 120.02602 * 180.29706 * 9 8 7 11 11 C 1.34781 * 120.00201 * 24.88132 * 10 9 8 12 12 O 1.21774 * 119.99817 * 5.51601 * 11 10 9 13 13 C 1.41772 * 119.99995 * 185.51656 * 11 10 9 14 14 H 1.08004 * 120.00015 * 0.02562 * 13 11 10 15 15 C 1.40137 * 119.99771 * 179.97438 * 13 11 10 16 16 N 1.30627 * 120.00196 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99617 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47137 * 60.00824 * 17 15 13 19 19 H 1.48508 * 109.46740 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47385 * 300.00232 * 17 15 13 21 21 C 1.39081 * 119.94383 * 0.02610 * 9 8 7 22 22 C 1.50703 * 120.01501 * 180.02562 * 21 9 8 23 23 C 1.37984 * 119.97084 * 359.97438 * 21 9 8 24 24 H 1.08997 * 109.47465 * 59.99791 * 1 2 3 25 25 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46926 * 299.99983 * 1 2 3 27 27 H 1.09001 * 109.46926 * 240.00017 * 2 1 3 28 28 H 1.08997 * 109.47465 * 120.00209 * 2 1 3 29 29 H 1.08993 * 109.47352 * 59.99904 * 3 2 1 30 30 H 1.09005 * 109.46963 * 300.00147 * 3 2 1 31 31 H 1.09001 * 109.47098 * 59.99727 * 4 3 2 32 32 H 1.09005 * 109.46842 * 299.99825 * 4 3 2 33 33 H 1.08007 * 119.98432 * 0.03116 * 7 6 5 34 34 H 1.08004 * 120.00812 * 180.02562 * 8 7 6 35 35 H 0.97000 * 119.99921 * 204.88571 * 10 9 8 36 36 H 0.96991 * 119.99923 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.46894 * 89.99843 * 22 21 9 38 38 H 1.08999 * 109.47255 * 209.99693 * 22 21 9 39 39 H 1.08998 * 109.47200 * 330.00304 * 22 21 9 40 40 H 1.08007 * 119.98409 * 179.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9679 -0.0010 7 6 6.2392 1.8660 -0.0031 8 6 7.6069 2.0454 -0.0036 9 6 8.1393 3.3307 -0.0030 10 7 9.5224 3.5135 -0.0097 11 6 10.3266 2.5534 -0.5076 12 8 9.8439 1.5716 -1.0423 13 6 11.7346 2.6865 -0.4087 14 1 12.1628 3.5570 0.0660 15 6 12.5708 1.6879 -0.9259 16 7 12.0530 0.6347 -1.4996 17 14 14.4260 1.8636 -0.7962 18 1 14.8160 1.9528 0.6338 19 1 15.0795 0.6824 -1.4152 20 1 14.8574 3.0953 -1.5048 21 6 7.2915 4.4333 -0.0013 22 6 7.8664 5.8263 -0.0012 23 6 5.9237 4.2511 -0.0008 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 5.8256 0.8683 -0.0044 34 1 8.2641 1.1884 -0.0056 35 1 9.9052 4.3316 0.3440 36 1 12.6318 -0.0562 -1.8578 37 1 8.0038 6.1628 -1.0289 38 1 7.1830 6.5015 0.5139 39 1 8.8284 5.8224 0.5114 40 1 5.2652 5.1072 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132709529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -90.749072 kcal Electronic energy + Delta-G solvation = -20755.117993 eV Core-core repulsion = 17533.564476 eV Total energy + Delta-G solvation = -3221.553517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34573 -40.04292 -38.24694 -36.08220 -35.02098 -34.44066 -33.26938 -31.02916 -29.71341 -28.46347 -27.41712 -24.75850 -24.02242 -22.32564 -21.85640 -21.41709 -19.49002 -18.58997 -17.81715 -17.69369 -17.28789 -16.70582 -15.87937 -15.64063 -15.28028 -15.09018 -14.84855 -14.70060 -14.42178 -14.21709 -13.93163 -13.55336 -13.49343 -13.24083 -13.01240 -12.82940 -12.71664 -12.64151 -12.57828 -12.14992 -12.06430 -11.99783 -11.90739 -11.65809 -11.46865 -10.99233 -10.52020 -9.85711 -9.61790 -8.38499 -8.31645 -7.00920 0.41699 0.59092 1.39238 1.41960 1.54559 2.20507 2.27507 2.35795 2.85906 3.03051 3.65823 3.85483 3.91488 3.96905 4.05502 4.13717 4.23016 4.33609 4.36472 4.48988 4.54652 4.66023 4.79432 4.86083 4.86939 4.90057 4.98701 5.06118 5.17469 5.21461 5.24044 5.31421 5.33807 5.43232 5.52116 5.59049 5.74464 5.88831 6.19597 6.33764 6.59825 6.73162 7.41682 8.38404 8.56569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.003386 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.453360 B = 8267.735119 C = 9223.872239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.051 3.949 5 O -0.324 6.324 6 C 0.085 3.915 7 C -0.192 4.192 8 C -0.128 4.128 9 C 0.128 3.872 10 N -0.689 5.689 11 C 0.528 3.472 12 O -0.613 6.613 13 C -0.565 4.565 14 H 0.091 0.909 15 C 0.031 3.969 16 N -0.802 5.802 17 Si 1.002 2.998 18 H -0.253 1.253 19 H -0.273 1.273 20 H -0.252 1.252 21 C -0.105 4.105 22 C -0.101 4.101 23 C -0.128 4.128 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.404 0.596 36 H 0.279 0.721 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 5.022 4.438 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.024 4.024 5 O -0.239 6.239 6 C 0.039 3.961 7 C -0.211 4.211 8 C -0.150 4.150 9 C 0.030 3.970 10 N -0.333 5.333 11 C 0.338 3.662 12 O -0.501 6.501 13 C -0.600 4.600 14 H 0.109 0.891 15 C -0.187 4.187 16 N -0.430 5.430 17 Si 0.820 3.180 18 H -0.177 1.177 19 H -0.198 1.198 20 H -0.176 1.176 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.240 0.760 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.315 4.292 3.980 16.395 hybrid contribution 1.203 -0.389 -0.002 1.265 sum -14.111 3.902 3.977 15.171 Atomic orbital electron populations 1.21739 0.94272 1.02369 1.02289 1.21452 0.97112 0.94739 1.02667 1.21547 0.90802 0.98659 1.03726 1.23004 0.96538 0.81395 1.01416 1.85952 1.18277 1.30180 1.89464 1.18926 0.82317 0.94020 1.00789 1.21153 0.92987 0.98747 1.08212 1.21233 0.95089 0.97321 1.01308 1.18038 0.84770 0.93644 1.00575 1.43673 1.03257 1.22429 1.63991 1.17419 0.88240 0.81867 0.78708 1.90562 1.76978 1.33099 1.49430 1.20565 0.90609 1.08465 1.40394 0.89097 1.27038 1.07012 0.93082 0.91552 1.70156 1.39383 1.07281 1.26152 0.85007 0.73892 0.79031 0.80030 1.17705 1.19771 1.17607 1.19745 0.92250 0.95422 1.03405 1.20689 1.01336 0.90728 1.02992 1.20243 0.93681 0.95071 1.05689 0.92403 0.91806 0.92230 0.91701 0.91410 0.90550 0.90879 0.92587 0.92030 0.85049 0.87100 0.75951 0.91099 0.90798 0.88632 0.91574 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.83 5.93 30.59 0.18 -1.65 16 3 C -0.11 -2.00 5.58 30.59 0.17 -1.83 16 4 C 0.05 1.25 4.74 71.98 0.34 1.59 16 5 O -0.32 -9.82 10.13 -92.52 -0.94 -10.76 16 6 C 0.09 2.97 6.69 22.57 0.15 3.12 16 7 C -0.19 -7.53 9.03 22.36 0.20 -7.33 16 8 C -0.13 -6.10 8.70 22.41 0.20 -5.90 16 9 C 0.13 5.69 6.41 38.33 0.25 5.94 16 10 N -0.69 -32.48 5.14 -311.32 -1.60 -34.08 16 11 C 0.53 30.68 7.37 85.11 0.63 31.30 16 12 O -0.61 -40.53 12.03 -4.59 -0.06 -40.59 16 13 C -0.57 -31.35 9.31 23.61 0.22 -31.13 16 14 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 15 C 0.03 1.70 5.50 85.33 0.47 2.17 16 16 N -0.80 -47.83 11.73 21.85 0.26 -47.57 16 17 Si 1.00 39.48 29.56 68.60 2.03 41.51 16 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 21 C -0.10 -3.68 5.90 -19.72 -0.12 -3.80 16 22 C -0.10 -2.64 9.74 71.24 0.69 -1.94 16 23 C -0.13 -4.16 9.63 22.35 0.22 -3.94 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.06 1.39 7.65 -2.39 -0.02 1.38 16 32 H 0.06 1.45 7.66 -2.38 -0.02 1.43 16 33 H 0.13 4.61 6.29 -2.91 -0.02 4.59 16 34 H 0.11 6.23 5.79 -2.91 -0.02 6.21 16 35 H 0.40 16.02 6.87 -92.71 -0.64 15.38 16 36 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 37 H 0.07 1.87 8.14 -2.38 -0.02 1.86 16 38 H 0.09 1.88 8.09 -2.39 -0.02 1.87 16 39 H 0.07 1.68 6.41 -2.39 -0.02 1.66 16 40 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -73.85 332.48 4.41 -69.44 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.41 Total: 36.56 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.31 Total: -14.52 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.35 Total: -81.65 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.99 Total: -51.35 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -73.85 4.41 -69.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132709529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.305 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds