Wall clock time and date at job start Mon Mar 30 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46714 * 2 1 4 4 C 1.53002 * 109.46967 * 119.99471 * 2 1 3 5 5 O 1.42903 * 109.47006 * 65.00728 * 4 2 1 6 6 C 1.35899 * 116.99930 * 180.02562 * 5 4 2 7 7 C 1.38747 * 120.05586 * 359.97438 * 6 5 4 8 8 C 1.38125 * 119.94590 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6 10 10 C 1.38243 * 120.11362 * 0.02562 * 9 8 7 11 11 C 1.38163 * 120.05438 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.02715 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47357 * 260.02510 * 12 11 10 14 14 C 1.34772 * 120.00011 * 180.02562 * 13 12 11 15 15 O 1.21685 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.46377 * 119.99734 * 180.02562 * 14 13 12 17 17 H 1.07997 * 119.99947 * 359.97438 * 16 14 13 18 18 C 1.40054 * 119.99763 * 179.97438 * 16 14 13 19 19 N 1.30672 * 119.99907 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99763 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47002 * 90.00161 * 20 18 16 22 22 H 1.48506 * 109.47006 * 210.00027 * 20 18 16 23 23 H 1.48501 * 109.47554 * 329.99867 * 20 18 16 24 24 H 1.09005 * 109.46677 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47577 * 299.99966 * 1 2 3 26 26 H 1.08998 * 109.46993 * 60.00668 * 1 2 3 27 27 H 1.08998 * 109.47577 * 240.00034 * 2 1 3 28 28 H 1.09002 * 109.47307 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47322 * 300.00021 * 3 2 1 30 30 H 1.09004 * 109.47455 * 59.99928 * 3 2 1 31 31 H 1.08998 * 109.47474 * 305.00373 * 4 2 1 32 32 H 1.08995 * 109.46823 * 185.00393 * 4 2 1 33 33 H 1.08000 * 120.03046 * 0.02562 * 7 6 5 34 34 H 1.07993 * 119.97844 * 179.72247 * 8 7 6 35 35 H 1.08004 * 119.94567 * 179.97438 * 9 8 7 36 36 H 1.08001 * 119.97538 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.47162 * 20.02710 * 12 11 10 38 38 H 1.09005 * 109.46612 * 140.02285 * 12 11 10 39 39 H 0.97001 * 119.99694 * 359.97438 * 13 12 11 40 40 H 0.97004 * 120.00112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6621 -2.0981 1.1921 6 6 2.0397 -2.8853 2.2335 7 6 2.7598 -2.3437 3.2886 8 6 3.1429 -3.1460 4.3457 9 6 2.8089 -4.4880 4.3531 10 6 2.0915 -5.0300 3.3030 11 6 1.7060 -4.2316 2.2434 12 6 0.9244 -4.8233 1.0987 13 7 1.8284 -5.0929 -0.0221 14 6 1.3475 -5.6266 -1.1624 15 8 0.1624 -5.8848 -1.2609 16 6 2.2509 -5.8965 -2.2821 17 1 3.3027 -5.6676 -2.1945 18 6 1.7512 -6.4515 -3.4669 19 7 0.4786 -6.7288 -3.5726 20 14 2.9039 -6.7953 -4.8960 21 1 3.4478 -8.1716 -4.7732 22 1 2.1587 -6.6697 -6.1743 23 1 4.0217 -5.8178 -4.8767 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 3.0205 -1.2957 3.2835 34 1 3.7073 -2.7260 5.1650 35 1 3.1098 -5.1138 5.1803 36 1 1.8322 -6.0784 3.3110 37 1 0.4570 -5.7539 1.4205 38 1 0.1539 -4.1199 0.7830 39 1 2.7730 -4.8867 0.0562 40 1 0.1324 -7.1129 -4.3933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132713144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:29 Heat of formation + Delta-G solvation = -70.205683 kcal Electronic energy + Delta-G solvation = -21356.447316 eV Core-core repulsion = 18135.784627 eV Total energy + Delta-G solvation = -3220.662689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18048 -37.79396 -36.95348 -35.18638 -33.61173 -32.28871 -30.63251 -29.77067 -27.20310 -26.84911 -26.48322 -24.69939 -22.19051 -21.34611 -20.06519 -19.52919 -17.99357 -17.17811 -16.22455 -15.79907 -15.53234 -15.19069 -14.47811 -14.43122 -14.22778 -13.91897 -13.85162 -13.10964 -13.00440 -12.69571 -12.47984 -12.43765 -12.19793 -12.01465 -11.55135 -11.31015 -11.19522 -11.09460 -11.05204 -10.87917 -10.75478 -10.61163 -10.47973 -10.33066 -10.15738 -8.83087 -8.77890 -8.06307 -7.46571 -7.34565 -6.10282 -4.55097 1.41091 1.56623 3.18490 3.24928 3.28647 3.30413 3.84654 4.18549 4.67573 4.68484 4.75471 4.87148 4.96106 5.00773 5.13135 5.21456 5.31716 5.32447 5.43681 5.47037 5.56471 5.62156 5.77439 5.78488 5.85416 5.87054 6.01253 6.06037 6.19986 6.25985 6.36353 6.44971 6.56531 6.60578 6.82503 6.95533 7.50884 7.59494 8.04360 8.21412 8.43145 9.10470 9.66264 10.69074 10.88814 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.005281 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.614588 B = 5300.792315 C = 6638.080189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.143 4.143 4 C 0.065 3.935 5 O -0.296 6.296 6 C 0.145 3.855 7 C -0.216 4.216 8 C -0.085 4.085 9 C -0.163 4.163 10 C -0.068 4.068 11 C -0.121 4.121 12 C 0.181 3.819 13 N -0.757 5.757 14 C 0.557 3.443 15 O -0.582 6.582 16 C -0.544 4.544 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.266 1.266 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.379 0.621 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 12.712 12.615 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.011 4.011 5 O -0.209 6.209 6 C 0.099 3.901 7 C -0.235 4.235 8 C -0.104 4.104 9 C -0.182 4.182 10 C -0.086 4.086 11 C -0.123 4.123 12 C 0.057 3.943 13 N -0.412 5.412 14 C 0.361 3.639 15 O -0.465 6.465 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.398 5.398 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.190 1.190 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.210 0.790 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.402 12.410 12.235 17.974 hybrid contribution 1.240 0.134 -0.402 1.311 sum 5.642 12.544 11.832 18.144 Atomic orbital electron populations 1.21805 0.94262 1.03042 1.01258 1.21124 0.97142 0.95466 0.97804 1.21769 1.01022 0.95050 1.02239 1.22873 0.99182 0.80094 0.98938 1.86231 1.73535 1.20246 1.40838 1.18885 0.93747 0.90524 0.86940 1.21180 1.05436 1.00590 0.96272 1.20859 0.98422 0.93798 0.97288 1.20996 1.02198 0.95390 0.99569 1.20990 0.95803 0.99497 0.92349 1.19630 1.03348 0.90810 0.98465 1.19591 0.92026 0.98273 0.84436 1.46098 1.09798 1.70617 1.14735 1.18192 0.88320 0.76626 0.80777 1.90590 1.17446 1.56548 1.81941 1.20874 0.94957 1.44406 0.97894 0.91589 1.25691 0.94952 0.93469 0.99002 1.70030 1.13077 1.31105 1.25636 0.86410 0.80764 0.79255 0.80513 1.19787 1.20503 1.18988 0.91375 0.93117 0.92544 0.89563 0.92501 0.91759 0.92636 0.92444 0.92310 0.85862 0.86260 0.86153 0.85268 0.92817 0.92328 0.79006 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.09 37.16 0.34 -1.45 16 2 C -0.10 -1.14 3.16 -90.62 -0.29 -1.42 16 3 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 4 C 0.06 0.79 4.12 37.16 0.15 0.94 16 5 O -0.30 -4.82 8.91 -19.42 -0.17 -5.00 16 6 C 0.15 2.29 6.66 -39.22 -0.26 2.03 16 7 C -0.22 -2.78 9.04 -39.43 -0.36 -3.13 16 8 C -0.09 -0.99 10.04 -39.60 -0.40 -1.39 16 9 C -0.16 -1.99 10.04 -39.56 -0.40 -2.39 16 10 C -0.07 -0.98 9.67 -39.61 -0.38 -1.36 16 11 C -0.12 -2.06 5.26 -104.47 -0.55 -2.61 16 12 C 0.18 3.81 5.46 -5.19 -0.03 3.78 16 13 N -0.76 -18.11 5.54 -62.90 -0.35 -18.46 16 14 C 0.56 16.49 7.75 -12.99 -0.10 16.39 16 15 O -0.58 -19.48 15.02 5.20 0.08 -19.41 16 16 C -0.54 -15.89 9.54 -35.63 -0.34 -16.23 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.09 2.53 5.50 -17.36 -0.10 2.43 16 19 N -0.77 -23.64 11.83 55.55 0.66 -22.98 16 20 Si 0.91 20.63 29.56 -169.99 -5.02 15.61 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 33 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.13 1.73 8.04 -52.49 -0.42 1.31 16 37 H 0.05 1.15 8.00 -51.93 -0.42 0.74 16 38 H 0.06 1.34 7.85 -51.93 -0.41 0.93 16 39 H 0.38 8.32 8.44 -40.82 -0.34 7.97 16 40 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -35.22 339.59 -8.11 -43.33 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.05 Total: 7.12 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.36 Total: -5.33 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.31 Total: -41.44 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.09 Total: -24.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.22 -8.11 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132713144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.874 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds